View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_38 (Length: 276)
Name: NF9730_low_38
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 37041533 - 37041312
Alignment:
| Q |
22 |
atggttgaagaactttctttgagattattgttgctactgttgccactgttagcaataagttcttttggaaaacaacgtttgagagaatgatcagcaaggt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37041533 |
atggttgaagaactttctttgagattattgttgctactgttgccactgttagcaataagttcttttggaaaacaacgtttgagagaatgatcagcaaggt |
37041434 |
T |
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| Q |
122 |
ctccccagttttggtatcttagtccacatgcattgcataaaactggcttctcttctggtccctggcgccatgctggagttgctggtgatgaatccatgtt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37041433 |
ctccccagttttggtatcttagtccacatgcattgcataaaactggcttctcttctggtccctggcgccatgctggagttgctggtgatgaatccatgtt |
37041334 |
T |
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| Q |
222 |
aatcaccgattcaaaatacttt |
243 |
Q |
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|||||||||||||||||||||| |
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| T |
37041333 |
aatcaccgattcaaaatacttt |
37041312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 37024555 - 37024334
Alignment:
| Q |
22 |
atggttgaagaactttctttgagattattgttgctactgttgccactgttagcaataagttcttttggaaaacaacgtttgagagaatgatcagcaaggt |
121 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
37024555 |
atggttgaagaactttctatgagaccgttgttgctactgttgccactattagcaacaagttcttttggaaacaaacgtttgagtgaatgatcagcaaggt |
37024456 |
T |
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| Q |
122 |
ctccccagttttggtatcttagtccacatgcattgcataaaactggcttctcttctggtccctggcgccatgctggagttgctggtgatgaatccatgtt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37024455 |
ctccccagttttggtatcttagtccacatgcattgcataaaactggtttctcttctggtccctggcgccatgctggagttgctggtgatgaatccatgtt |
37024356 |
T |
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| Q |
222 |
aatcaccgattcaaaatacttt |
243 |
Q |
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|||||||||||||||||||||| |
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| T |
37024355 |
aatcaccgattcaaaatacttt |
37024334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 37019607 - 37019384
Alignment:
| Q |
22 |
atggttgaagaactttctttgagattattgttgctactgttgccactgt---tagcaataagttcttttggaaaacaacgtttgagagaatgatcagcaa |
118 |
Q |
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|||||||||||||||||||||||| ||||| | ||| ||||||||||| || ||| |||||||||||||||||||||||||||||||| || ||| |
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| T |
37019607 |
atggttgaagaactttctttgagactattgcttctaatgttgccactgcatctaacaacgagttcttttggaaaacaacgtttgagagaatgttcttcaa |
37019508 |
T |
|
| Q |
119 |
ggtctccccagttttggtatcttagtccacatgcattgcataaaactggcttctcttctggtccctggcgccatgctggagttgctggtgatgaatccat |
218 |
Q |
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||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
37019507 |
ggtttcccccgtttcggtatcttgttccacatgcattgcataaaactggcttctcttctggtccttggcgccatactggagttgctggtgatgaatccat |
37019408 |
T |
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| Q |
219 |
gttaatcaccgattcaaaatactt |
242 |
Q |
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||||||||||||| |||| |||| |
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| T |
37019407 |
tttaatcaccgattgaaaacactt |
37019384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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