View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9730_low_39 (Length: 275)
Name: NF9730_low_39
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_39 |
 | |
|
| [»] scaffold0651 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 31321632 - 31321890
Alignment:
| Q |
1 |
tggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtcgccaggtgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31321632 |
tggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtggccaggtgag |
31321731 |
T |
|
| Q |
101 |
aattggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31321732 |
aattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaag |
31321831 |
T |
|
| Q |
201 |
ctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31321832 |
ctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcct |
31321890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 31333885 - 31334143
Alignment:
| Q |
1 |
tggtcagagaattaagtgtaatgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtcgccaggtgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31333885 |
tggtcagagaattaagtgtaatgagaacaccagtgagaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtggccaggtgag |
31333984 |
T |
|
| Q |
101 |
aattggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31333985 |
aattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaag |
31334084 |
T |
|
| Q |
201 |
ctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31334085 |
ctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcct |
31334143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 255
Target Start/End: Original strand, 39110404 - 39110541
Alignment:
| Q |
118 |
ttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtt |
217 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||| ||||||| | || ||||| |||||||| ||||| || ||||||||||| ||||||||| ||| |
|
|
| T |
39110404 |
ttctgcacatcaaatgggaagttgtagaatgggtaagaatgaagaagagggtgcagttgatgagaatggagaaagttgggaagcaaaagggttgtatgtg |
39110503 |
T |
|
| Q |
218 |
tgtgatgctagtgttcttccaactgctgttggtgttaa |
255 |
Q |
| |
|
||||||| |||||| | || | ||| ||||||||||| |
|
|
| T |
39110504 |
tgtgatggaagtgttttgcctagtgcagttggtgttaa |
39110541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 2039 - 2010
Alignment:
| Q |
1 |
tggtcagagaattaagtgtaatgagaacac |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2039 |
tggtcagagaattaagtgtaatgagaacac |
2010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 243
Target Start/End: Complemental strand, 33521232 - 33521092
Alignment:
| Q |
103 |
ttggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagct |
202 |
Q |
| |
|
||||||| ||||| | |||||||| || ||||| ||||| | || ||| | | ||| |||||||| | |||||||||||||| ||| |||||||||| |
|
|
| T |
33521232 |
ttggaatatgtatgcatctgctcaccagatggggagttgtaggataggaatcactgataaggaaggcacggttgatgaaaatggacagaattgggaagct |
33521133 |
T |
|
| Q |
203 |
gaagggttgtttgtttgtgatgctagtgttcttccaactgc |
243 |
Q |
| |
|
||||| | ||||| |||||||| ||| | |||||||||| |
|
|
| T |
33521132 |
gaaggactatttgtgtgtgatgcaagtttgtttccaactgc |
33521092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University