View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9730_low_4 (Length: 679)

Name: NF9730_low_4
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9730_low_4
NF9730_low_4
[»] chr7 (2 HSPs)
chr7 (1-464)||(2792842-2793312)
chr7 (547-669)||(2793395-2793517)
[»] chr5 (1 HSPs)
chr5 (245-331)||(9121221-9121307)
[»] chr4 (2 HSPs)
chr4 (590-669)||(48668020-48668099)
chr4 (4-64)||(48667589-48667649)
[»] chr2 (1 HSPs)
chr2 (229-297)||(43920779-43920848)
[»] chr1 (2 HSPs)
chr1 (250-281)||(1651636-1651667)
chr1 (217-296)||(52920995-52921074)
[»] chr6 (1 HSPs)
chr6 (217-331)||(20430534-20430648)
[»] chr3 (1 HSPs)
chr3 (79-124)||(20685682-20685727)
[»] chr8 (1 HSPs)
chr8 (93-129)||(30191073-30191109)


Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 2792842 - 2793312
Alignment:
Q  1 cagcttcttgttacactgctcctcttcaatgctcttgccatggaggtaatttaatttcaatcatgaatatatttatgcttgtttagtttgatttatttga 100  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2792842 cagcttcttgttacactgcttctcttcaatgctcttaccatggaggtaatttaatttcaatcatgaatatatttatgcttgtttagtttgatttatttga 2792941  T
Q  101 gtttatctattggcatacgcacttcttagtgagaaagtttatgttcatgtgcttttttagaatagcttataatgaaaacaaattccgcctatgtttaggt 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2792942 gtttatctattggcatacacacttcttagtgagaaagtttatgttcatatccttttttagaatagcttataatgaaaacaaattccgcctatgtttaggt 2793041  T
Q  201 ttgttttccattgtcagtcccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtccaatagctatgacatgaata 300  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2793042 ttgttttccattgtcggccccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtccaatatctatgacatgaata 2793141  T
Q  301 gaatacgcattagtgtgaagattaggtcgtttcttggacgacactcaatgtatagctcaagcagttttatatagaacactatggtgtcgttcgat---tg 397  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||   ||    
T  2793142 gaatacgcaatagtgtgaagattaggttgtttcttggacgacactcattgtatagctcaagcagttttttatagaacactatggtgtcgttcgatttatg 2793241  T
Q  398 ttgttgttgttgtaat----aaaacaacatatagattatatgaaataactagttatacataagtgctttta 464  Q
    ||||||||||||| ||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2793242 ttgttgttgttgttataatgaaaacaacatatagattatatgaaataactagttatacataagtgctttta 2793312  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 547 - 669
Target Start/End: Original strand, 2793395 - 2793517
Alignment:
Q  547 ttatatcgattcctaaaccgaaaaaactgtttgacacctgtttctttcatacttccaatttgcaggctcttcctgtattcctatataaaatcaccaatcc 646  Q
    |||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  2793395 ttatatcgattcctaaaccgaaaaaactgtttaacacccgttgctttcaaacttccaatctgcaggctcttcctatattcctatataaaatcaccaatcc 2793494  T
Q  647 atttcttgccatcattgtctctg 669  Q
    |||||||||||||||||||||||    
T  2793495 atttcttgccatcattgtctctg 2793517  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 245 - 331
Target Start/End: Complemental strand, 9121307 - 9121221
Alignment:
Q  245 tatgttaagcttgggcagcaaacataaaactttgtccaatagctatgacatgaatagaatacgcattagtgtgaagattaggtcgtt 331  Q
    ||||||||||||||||| ||||||||||||||||||||||   | ||| ||||||  |||||||| |||||| |||  |||||||||    
T  9121307 tatgttaagcttgggcaacaaacataaaactttgtccaatctttttgatatgaatcaaatacgcaatagtgttaaggctaggtcgtt 9121221  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 590 - 669
Target Start/End: Original strand, 48668020 - 48668099
Alignment:
Q  590 ctttcatacttccaatttgcaggctcttcctgtattcctatataaaatcaccaatccatttcttgccatcattgtctctg 669  Q
    |||||| ||||||||| |||||||||||||| ||| |||| ||||| ||  ||||| ||||||||| |||||| ||||||    
T  48668020 ctttcaaacttccaatctgcaggctcttcctatatacctagataaactcttcaatcaatttcttgctatcattctctctg 48668099  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 48667589 - 48667649
Alignment:
Q  4 cttcttgttacactgctcctcttcaatgctcttgccatggaggtaatttaatttcaatcat 64  Q
    ||||||||||| ||||| ||||  |||||  |||| |||||||||||| ||||||||||||    
T  48667589 cttcttgttactctgcttctctgtaatgccgttgctatggaggtaattcaatttcaatcat 48667649  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 43920848 - 43920779
Alignment:
Q  229 ggtaaaaggagacggttatgttaagcttgggcagcaaa-cataaaactttgtccaatagctatgacatga 297  Q
    |||||||||||| |||| |||||| |||| |||||||| | ||||||||||||||||  |||||||||||    
T  43920848 ggtaaaaggagagggttgtgttaaacttgagcagcaaaacgtaaaactttgtccaatctctatgacatga 43920779  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 281
Target Start/End: Complemental strand, 1651667 - 1651636
Alignment:
Q  250 taagcttgggcagcaaacataaaactttgtcc 281  Q
    ||||||||||||||||||||||||||||||||    
T  1651667 taagcttgggcagcaaacataaaactttgtcc 1651636  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 52920995 - 52921074
Alignment:
Q  217 gtcccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtccaatagctatgacatg 296  Q
    |||||||||  ||||||||||||| |||| ||||| || | | |||| |||||||||||||||| |||  ||||||||||    
T  52920995 gtcccaagcccgggtaaaaggagagggttgtgttaggccttgacagccaacataaaactttgtcgaatctctatgacatg 52921074  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 331
Target Start/End: Complemental strand, 20430648 - 20430534
Alignment:
Q  217 gtcccaagctagggtaaaaggagacggttatgttaagcttgggcagcaaacataaaactttgtccaatagctatgacatgaatagaatacgcattagtgt 316  Q
    |||||||||| ||||||||||||| |||| ||||| || | | |||| ||| |||||||||||  |||  ||||||||||||   |||||  | ||||||    
T  20430648 gtcccaagctcgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgacatgaaccaaatacaaaatagtgt 20430549  T
Q  317 gaagattaggtcgtt 331  Q
    |||  ||||||||||    
T  20430548 gaattttaggtcgtt 20430534  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 20685727 - 20685682
Alignment:
Q  79 ttgtttagtttgatttatttgagtttatctattggcatacgcactt 124  Q
    |||||| | |||| ||||||||||||||||||||||||| ||||||    
T  20685727 ttgtttggcttgacttatttgagtttatctattggcataagcactt 20685682  T

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Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 30191073 - 30191109
Alignment:
Q  93 ttatttgagtttatctattggcatacgcacttcttag 129  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  30191073 ttatttgagtttatctattggcataagcacttgttag 30191109  T

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