View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_40 (Length: 264)
Name: NF9730_low_40
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 14531779 - 14531914
Alignment:
| Q |
18 |
caatgaaggtggaatttccaataaacccgaatttattccacccttcacaacacattaattatatttttacctcaccatgtatctctgtaactattttaat |
117 |
Q |
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| T |
14531779 |
caatgaaggtggaatttccaataaacccgaatttattccacccttcacaacacattaattatatttgtacctcaccatgtctctctgtaactattttaat |
14531878 |
T |
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| Q |
118 |
ctctcctccaacgtaaaattgcaaaaatgatttagc |
153 |
Q |
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| T |
14531879 |
ctctcctccaacgtaaaattgcaaaaatgatttagc |
14531914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 14531956 - 14532057
Alignment:
| Q |
163 |
gaagagaagaagagcttgccttgccattggaggcaactttgttagacaagagaaaggataaatcaccacttccacagcagacatccaacacacgatcacc |
262 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14531956 |
gaagagaagaagagtttgccttgccattggaggcaactttgttagacaagagaaaggataaatcaccacttccacagcagacatccaacacacgatcacc |
14532055 |
T |
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| Q |
263 |
ct |
264 |
Q |
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| T |
14532056 |
ct |
14532057 |
T |
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