View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_45 (Length: 252)
Name: NF9730_low_45
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 38094932 - 38095169
Alignment:
| Q |
1 |
acatggatttcacacctacattcaattcacatcatcatcttcttcttct---aaattaacaaatttatcttgattttacatcttgcatcattggtttcaa |
97 |
Q |
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| T |
38094932 |
acatggatttcacacctacattcaattcacatcatcatcttcttcttcttctaaattaacaaatttctctt-attttacatcttgcatcattggtttcaa |
38095030 |
T |
|
| Q |
98 |
caatatatgtagctaatgggttcagattttcaatcgatttgtttctatttctttgattcctgcatttaatattattcttcatcctcttgaatttggttta |
197 |
Q |
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| T |
38095031 |
caatatatgtagctaatgggttcagattttcaatcgatttgtttctatttctttgattcctgcatttaatattattcttcatcctcttgaatttggttta |
38095130 |
T |
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| Q |
198 |
tccaatttttcaacctaaaattttcagtttctatccatc |
236 |
Q |
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| T |
38095131 |
tccaatttttcaacctaaaattttcagtttctatccatc |
38095169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 237
Target Start/End: Original strand, 47955428 - 47955626
Alignment:
| Q |
38 |
tcttcttcttctaaattaacaaatttatcttgattttacatcttgcatcattggtttcaacaatatatgtagctaatgggttcag-----attttcaatc |
132 |
Q |
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| T |
47955428 |
tcttcttcttctaaattaacaaatttctcttgattttacatcttgcaa---tgatttcaacaatatattctactaatgagttcagttcagattttcaatc |
47955524 |
T |
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| Q |
133 |
gatttgtttctatttctttgattcctgcatttaatattattcttcatcctcttgaatttggtttatccaatttttcaacctaaaattttcagtttctatc |
232 |
Q |
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| T |
47955525 |
ggtttgtttagatttctttgattgatgcacttaat--tattcttcatcctcttgaatttggtttatctattttttcaacctagaa-tttcagtttcaatc |
47955621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 232
Target Start/End: Original strand, 32019298 - 32019418
Alignment:
| Q |
109 |
gctaatgggttcagattttcaatcgatttgtttctatttctttgattcctgcatttaatattattcttcatcctcttgaatttggtttatccaatttttc |
208 |
Q |
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||||||| ||||| ||||||||| |||||||||||||||||||||| || | ||||| |||||||||||||||| ||||||||||||| | |||||| |
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| T |
32019298 |
gctaatgagttcatattttcaattcatttgtttctatttctttgatttatggacttaat--tattcttcatcctcttcaatttggtttatctagtttttc |
32019395 |
T |
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| Q |
209 |
aacctaaaattttcagtttctatc |
232 |
Q |
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|| | || | |||||||||||||| |
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| T |
32019396 |
aa-caaagaatttcagtttctatc |
32019418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 40642154 - 40642253
Alignment:
| Q |
51 |
aattaacaaatttatcttgattttacatcttgcatcattggtttcaacaatatatgtagctaatgggttcagattttcaatcgatttgtttctatttctt |
150 |
Q |
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| T |
40642154 |
aattaacaaatttctcttgcttttacatttaggggcattgatttcagcaatatatgcttctaatgagttcaaatttgcaatcgatttgtttctatttctt |
40642253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 32019264 - 32019296
Alignment:
| Q |
51 |
aattaacaaatttatcttgattttacatcttgc |
83 |
Q |
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| T |
32019264 |
aattaacaagtttatcttgattttacatcttgc |
32019296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 2758176 - 2758091
Alignment:
| Q |
51 |
aattaacaaatttatcttgattttacatcttgcatcattggtttcaacaatatatgtagctaatgggttcagattttcaatcgattt |
137 |
Q |
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||||||||||||| |||||||||||||| | ||| ||||| ||||||||||||||| ||||||| ||||| ||||||||||||||| |
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| T |
2758176 |
aattaacaaatttctcttgattttacatat-gcagcattgatttcaacaatatatgctgctaatgagttcatattttcaatcgattt |
2758091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 2758080 - 2758018
Alignment:
| Q |
169 |
ttattcttcatcctcttgaatttggtttatccaatttttcaacctaaaattttcagtttctatc |
232 |
Q |
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| T |
2758080 |
ttattcttcatcctcttgaatttggtttatctagtttttcaacttagaa-tttcagtttctatc |
2758018 |
T |
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