View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_46 (Length: 245)
Name: NF9730_low_46
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_46 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 38558346 - 38558109
Alignment:
| Q |
8 |
gagcacagaaggaactggccttccctttggacttagcaacaatcttcttggttggcttttgtttggtgtcttcggtcttatatgggctctctattttata |
107 |
Q |
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| T |
38558346 |
gagcaccgaaggaactggccttccctttggacttagcaacaatcttcttggttggcttttgtttggtgtcttcggtcttatatgggctctctattttata |
38558247 |
T |
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| Q |
108 |
tacgcttcctcccttgatgaggatgaagattctggattgtctttgtaaaaccccaaaaggatatgcaccttagaaattggacagttcagtccttttttgt |
207 |
Q |
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| T |
38558246 |
tacgcttcctcccttgatgaggatgaagattctggattgtctttgtaaaaccccaaaaggatatgcaccttagaaattggacagttcagtccttttttgt |
38558147 |
T |
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| Q |
208 |
tgtattaaaaaactactacttgtgtatttatttattct |
245 |
Q |
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| T |
38558146 |
tgtattaaaaaactactacttgtgtatttatttattct |
38558109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 31301956 - 31302086
Alignment:
| Q |
15 |
gaaggaactggccttccctttggacttagcaacaatcttcttggttggcttttgtttggtgtcttcggtcttatatgggctctctattttatatacgctt |
114 |
Q |
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|||||||| || |||||||||||||| ||||||||||||||||| ||||| | |||||||| |||||| |||| ||||||||||||||||| ||||||| |
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| T |
31301956 |
gaaggaaccggacttccctttggactcagcaacaatcttcttggatggctcctttttggtgtgttcggttttatctgggctctctattttatttacgctt |
31302055 |
T |
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| Q |
115 |
cctcccttgatgaggatgaagattctggatt |
145 |
Q |
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| T |
31302056 |
cgggtcttgaagaggatgaagagtctggatt |
31302086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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