View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_47 (Length: 241)
Name: NF9730_low_47
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 33627218 - 33627430
Alignment:
| Q |
18 |
cattgtacctatctgaaattgctccaccaaaatggcgaggcgctttgagcacaagctttccattctttttaggatttggtataatcgttgcaggttgcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33627218 |
cattgtacctatctgaaattgctccaccaaaatggcgaggcgctttgagcacaagctttccattctttttaggatttggtataatcgttgcaggttgcat |
33627317 |
T |
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| Q |
118 |
aaactatggcactgccaagcatacatggggatggagactctctcttggacttgcagttgtgcctgcagctgtaattacaattggtgccttcctcataact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33627318 |
aaactatggcactgccaagcatacatggggatggagactctctcttggacttgcagttgtgcctgcagctgtaattacaattggtgccttcctcataact |
33627417 |
T |
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| Q |
218 |
gacacacccaaca |
230 |
Q |
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||||||||||||| |
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| T |
33627418 |
gacacacccaaca |
33627430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 33622230 - 33622407
Alignment:
| Q |
23 |
tacctatctgaaattgctccaccaaaatggcgaggcgctttgagcacaagctttccattctttttaggatttggtataatcgttgcaggttgcataaact |
122 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |||||||||| |
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| T |
33622230 |
tacctatctgaaattgcttcaccaaaatggcgaggcgctttgagcacaggctttccattctttttaggacttggtataatcgctgcagattgcataaaca |
33622329 |
T |
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| Q |
123 |
atggcactgccaagcatacatggggatggagactctctcttggacttgcagttgtgcctgcagctgtaattacaattggtgcct |
206 |
Q |
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| T |
33622330 |
atggcaccgccgagcacac------atggagactctctcttggacttgcagtggtgcttgcatctgtaatgacaattggcgcct |
33622407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 230
Target Start/End: Original strand, 33608836 - 33609040
Alignment:
| Q |
26 |
ctatctgaaattgctccaccaaaatggcgaggcgctttgagcacaagctttccattctttttaggatttggtataatcgttgcaggttgcataaactatg |
125 |
Q |
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||||||||||||||||| |||||||||||||||||||| || || |||||| ||||||||| ||| ||||| || || |||||| ||||||||||||| |
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| T |
33608836 |
ctatctgaaattgctcccccaaaatggcgaggcgcttttagtaccggctttcaattctttttgggagttggtgtagtcactgcaggctgcataaactatg |
33608935 |
T |
|
| Q |
126 |
gcactgccaagcatacatggggatggagactctctcttggacttgcagttgtgcctgcagctgtaattacaattggtgccttcctcataactgacacacc |
225 |
Q |
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|||| || |||| ||||||||||||||||| || |||||||||||||| || |||||| || || ||||||||| ||||||||||| | |||||||| |
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| T |
33608936 |
gcaccgctgagcacacatggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacaattggttccttcctcatatcggacacacc |
33609035 |
T |
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| Q |
226 |
caaca |
230 |
Q |
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||||| |
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| T |
33609036 |
caaca |
33609040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 33618005 - 33618198
Alignment:
| Q |
20 |
ttgtacctatctgaaattgctccaccaaaatggcgaggcgctttgagcacaagctttccattctttttaggatttggtataatcgttgcaggttgcataa |
119 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||||| |||| | ||| |||||| ||||| || ||| ||||| || ||| ||| || ||||||| |
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| T |
33618005 |
ttgtacctatctgaaactgctcccccaaaatggcgaggcacttttaacacgggctttcagttcttcttgggaattggtgtagtcgctgccggctgcataa |
33618104 |
T |
|
| Q |
120 |
actatggcactgccaagcatacatggggatggagactctctcttggacttgcagttgtgcctgcagctgtaattacaattggtgccttcctcat |
213 |
Q |
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|||| | ||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||| ||| |||||||||| |
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| T |
33618105 |
actacgccacggccaagcacacatggggatggagactctctcttggacttgcagtggttcctgcagctgtgatgacaatcggttccttcctcat |
33618198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 33588127 - 33588321
Alignment:
| Q |
23 |
tacctatctgaaattgctccaccaaaatggcgaggcgctttgagcacaagctttccattctttttaggatttggtataatcgttgcaggttgcataaact |
122 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| ||||| |||||| |||| | | |||| |||||| |||| ||| ||||||||||| | |
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| T |
33588127 |
tacctttctgaaattgctccaccaaaatggtgaggtgctttcagcacaggcttccaactcttcttaggagttgg------cgt----ggttgcataaatt |
33588216 |
T |
|
| Q |
123 |
atggcactgccaagcatacatggggatggagactctctcttggacttgcagttgtgcctgcagctgtaattacaattggtgccttcctcataactgacac |
222 |
Q |
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| | ||||||||||| |||||||| ||| |||||||||||||||| ||||| ||||||| ||| || || ||||||||||||||||||||| | ||||| |
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| T |
33588217 |
acgcgactgccaagcaaacatggggctggcgactctctcttggactagcagtggtgcctgaagccgtgatgacaattggtgccttcctcatatccgacac |
33588316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 33595299 - 33595493
Alignment:
| Q |
23 |
tacctatctgaaattgctccaccaaaatggcgaggcgctttgagcacaagctttccattctttttaggatttggtataatcgttgcaggttgcataaact |
122 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| ||||| |||||| |||| | | |||| |||||| |||| ||| ||||||||||| | |
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| T |
33595299 |
tacctttctgaaattgctccaccaaaatggtgaggtgctttcagcacaggcttccaactcttcttaggagttgg------cgt----ggttgcataaatt |
33595388 |
T |
|
| Q |
123 |
atggcactgccaagcatacatggggatggagactctctcttggacttgcagttgtgcctgcagctgtaattacaattggtgccttcctcataactgacac |
222 |
Q |
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| | ||||||||||| |||||||| ||| |||||||||||||||| ||||| ||||||| ||| || || ||||||||||||||||||||| | ||||| |
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| T |
33595389 |
acgcgactgccaagcaaacatggggctggcgactctctcttggactagcagtggtgcctggagccgtgatgacaattggtgccttcctcatatccgacac |
33595488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 33602430 - 33602624
Alignment:
| Q |
23 |
tacctatctgaaattgctccaccaaaatggcgaggcgctttgagcacaagctttccattctttttaggatttggtataatcgttgcaggttgcataaact |
122 |
Q |
| |
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||||| |||||||||||||||||||||||| |||| ||||| |||||| |||| | | |||| |||||| |||| ||| ||||||||||| | |
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| T |
33602430 |
tacctttctgaaattgctccaccaaaatggtgaggtgctttcagcacaggcttccaactcttcttaggagttgg------cgt----ggttgcataaatt |
33602519 |
T |
|
| Q |
123 |
atggcactgccaagcatacatggggatggagactctctcttggacttgcagttgtgcctgcagctgtaattacaattggtgccttcctcataactgacac |
222 |
Q |
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| | ||||||||||| |||||||| ||| |||||||||||||||| ||||| ||||||| ||| || || ||||||||||||||||||||| | ||||| |
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| T |
33602520 |
acgcgactgccaagcaaacatggggctggcgactctctcttggactagcagtggtgcctggagccgtgatgacaattggtgccttcctcatatccgacac |
33602619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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