View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_48 (Length: 241)
Name: NF9730_low_48
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 19398410 - 19398187
Alignment:
| Q |
1 |
ccggactttaaatttggctaatacaatgatataaatataaattttaaattgatatgattgtactagactataagcaacctctaatttaatgacatgatat |
100 |
Q |
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| T |
19398410 |
ccggactttaaatttggctaatacaatgatataaatataaattttaaattgatatgattgtactagactataagcaacctctaatttaatgacatgatat |
19398311 |
T |
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| Q |
101 |
ttgtagttatgtattgcaaacaaatggtactttgacgtaaatgatcaatttgtttctacatttcaatgctatctaatatctatcattttgtttctaacat |
200 |
Q |
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| T |
19398310 |
ttgtagttatgtattgcaaacaaatggtactttgacgtaaatgatcaatttgtttctacatttcaatgctatctaatatctatcattttgtttctaacat |
19398211 |
T |
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| Q |
201 |
tgctatttatgtaatgcctatagt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
19398210 |
tgctatttatgtaatgcctatagt |
19398187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 19374106 - 19373962
Alignment:
| Q |
85 |
tttaatgacatgatatttgtagttatgtattgcaaacaaatggtactttgac----gtaaatgatcaatttgtttctacatttcaatgctatctaatatc |
180 |
Q |
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| T |
19374106 |
tttaaagacatgatatttgtagttctgtattgcaaacaaatggtacattgactgccgtaaatgatcaatttgtttctacatttcaatgctatctaatatc |
19374007 |
T |
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| Q |
181 |
tatcattttg-tttctaacattgctatttatgtaatgcctatagt |
224 |
Q |
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| T |
19374006 |
tatcaatttgttttctaacattgctatttatgtaatgcctatagt |
19373962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 19332521 - 19332386
Alignment:
| Q |
93 |
catgatatttgtagttatgtattgcaaacaaatggtactttgac----gtaaatgatcaatttgtttctacatttcaatgctatctaatatctatcattt |
188 |
Q |
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||||||||||| |||| |||||||| |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
19332521 |
catgatatttgcagttttgtattgccaacaaatggtacattgactgccgtaaatgatcaatttatttctacatttcaatgctatctaatatctatcaatt |
19332422 |
T |
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| Q |
189 |
tgtttctaacattgctatttatgtaatgcctatagt |
224 |
Q |
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| T |
19332421 |
tgtttctaacattgctatttatgtaatgccaatagt |
19332386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 19374235 - 19374185
Alignment:
| Q |
35 |
atataaattttaaattgatatgattgtactagactataagcaacctctaat |
85 |
Q |
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||||||||||||| | |||||||||| ||||||||||||||||||||||| |
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| T |
19374235 |
atataaattttaagtgaatatgattgttctagactataagcaacctctaat |
19374185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 19373963 - 19373925
Alignment:
| Q |
152 |
gtttctacatttcaatgctatctaatatctatcattttg |
190 |
Q |
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|||||||||| ||||||||||||||||||||||| |||| |
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| T |
19373963 |
gtttctacatctcaatgctatctaatatctatcaatttg |
19373925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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