View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_5 (Length: 628)
Name: NF9730_low_5
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 18 - 613
Target Start/End: Original strand, 43762881 - 43763476
Alignment:
| Q |
18 |
atttccttgtttcttcttatgcctggtatgtaggaatctaagaggaattatgcaggagataggggaattatattagtgggttgaaattgaaatcagctct |
117 |
Q |
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| T |
43762881 |
atttccttgtttcttcttatgcctggtatgtaggaatctaagaggaattatgcaggagataggggaattatattagtgggttgaaattgaaatcagctct |
43762980 |
T |
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| Q |
118 |
tttaagagtaataccatatagaggcaatattgaagagccaaattcgtctgcttggaagacaggtgttgtttatgcgatccgataagaggagcaagtattt |
217 |
Q |
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| T |
43762981 |
tttaagagtaataccatatagatgcaatattgaagagccaaattcgtctgcttggaagacaggtgttgtttatgcgatccgataagaggagtaagtattt |
43763080 |
T |
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| Q |
218 |
tcattttattgcttttttagggtgcattttcatgatatatttgtaacagtatctcttgtataactggtgcaaaatggcgtttgaaataaatatgattatt |
317 |
Q |
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| T |
43763081 |
tcattttattgcttttttagggtgcattttcatgatatatttgtaacagtatctcttgtataactggtgcaaaatggcgtttgaaataaatatgattatt |
43763180 |
T |
|
| Q |
318 |
ctttctccttaaatcgttccagtgcaagtacaatatttggctgttactatgattcagaggagtactcggcaagttaatttctcttgctcgcgagtatggt |
417 |
Q |
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| T |
43763181 |
ctttttccttaaatcgttccagtgcaagtacaatatttggctgttactatgattcagaggagtactcggcaagttaatttctcttgctcgcgagtatggt |
43763280 |
T |
|
| Q |
418 |
agtattcaattagtagttcatcaaaatatataatcgctttattaagttgaaaccagttcacactgattgaaactgacttaagacactctgagtgaaattt |
517 |
Q |
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| T |
43763281 |
agtattcaattagtagttcatcaaaatatataatcgctttattaagttgaaaccagttcacactgattgaaactgaattaagacactctgattgaaattt |
43763380 |
T |
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| Q |
518 |
ggtttataaaaatgctgaaatctgaatatgttacgctaaaaattgcttttagtccttcaataataacaggattgcctggtgtgttctcaatgatgt |
613 |
Q |
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| T |
43763381 |
ggtttataaaaatgctgaaatctgaatatgttacgctaaaaattgcttttagtccttcaataataacaggattgcctggtgtgttctcaattatgt |
43763476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 43757126 - 43757240
Alignment:
| Q |
49 |
aggaatctaagaggaattatgcaggagataggggaattatattagtgggttgaaattgaaatcagctc-ttttaagagtaataccatatagaggcaatat |
147 |
Q |
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|||||||||||| ||| |||| ||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |
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| T |
43757126 |
aggaatctaagaagaactatggtggagataagggaattatattactgggttgaaattgaaatcaactcattttaaggctaataccatatagaggcaatag |
43757225 |
T |
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| Q |
148 |
tgaagagccaaattc |
162 |
Q |
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||||||| ||||||| |
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| T |
43757226 |
tgaagagtcaaattc |
43757240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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