View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_50 (Length: 238)
Name: NF9730_low_50
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_50 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 26 - 238
Target Start/End: Complemental strand, 35946003 - 35945785
Alignment:
| Q |
26 |
ggaccaatgacatatttaagt----tacaca---catatatcttcactccaattaagttcttcatgctttcatcgccctaaacaaataacaaaatcgata |
118 |
Q |
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| T |
35946003 |
ggaccaatgacatatttaagtcagatacacaatacatatatcttcactccaattaagttcttcatgctttcattgccctaaacaagtaacaaaatcggtt |
35945904 |
T |
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| Q |
119 |
tttgcatcaagaacttggttaatctaattatttgattgatttctttattataatagatgcaggagtttcatcagtcaagcaaaagtcagcaaaagctagt |
218 |
Q |
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| T |
35945903 |
tttgcatcaagaacttg-ttaatctaattatttgattgatttctttattataatagatgcaggagtttcatcagtcaagcaagagtcaacaaaagctagt |
35945805 |
T |
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| Q |
219 |
tgtgtttgtgtctgcagatc |
238 |
Q |
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| T |
35945804 |
tgtgtttgtgtctgcagatc |
35945785 |
T |
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Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 12132650 - 12132791
Alignment:
| Q |
65 |
ctccaattaagttcttcatgctttcatcgccctaaacaaataacaaaatcgatatttgcatcaagaacttggttaatctaattatttgattgatttcttt |
164 |
Q |
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| T |
12132650 |
ctccaattaatttctacatgctttcattgccctaaacaagtaacaaaatatgcatttgcatcaagtatttgggtaatctaactatttgattgatttcttt |
12132749 |
T |
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| Q |
165 |
attataatagatgcaggagtttcatcagtcaagcaaaagtca |
206 |
Q |
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| T |
12132750 |
attataatagatgcaggagttccatcagtcaagcaagagtca |
12132791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 12133149 - 12133021
Alignment:
| Q |
76 |
ttcttcatgctttcatcgccctaaacaaataacaaaatcgatatttgcatcaagaacttggttaatctaattatttgattgatttctttattataataga |
175 |
Q |
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| T |
12133149 |
ttcttcttgctttcattgccctaaacaagtaacaaaatcggcatttgcatcaa-aacttggttaatctaactatttgattgatttctttattatgataga |
12133051 |
T |
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| Q |
176 |
tgcaggagtttcatcagtcaagcaaaagtc |
205 |
Q |
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| T |
12133050 |
tgcaggagttccatcagtcaagcaagagtc |
12133021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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