View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9730_low_6 (Length: 575)
Name: NF9730_low_6
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 13350424 - 13349878
Alignment:
| Q |
18 |
ctccaaccttttaccatctccttcgagtcccgaatggctaagcaaagccgacaacgcatggcaactaatggccgcgacattagtcggcatgcaaagtgtt |
117 |
Q |
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| T |
13350424 |
ctccaaccttttaccatctccttcgagtcccgaatggctaagcaaagccgacaacgcatggcaactaatggccgcaacattagtcggcatgcaaagtgtt |
13350325 |
T |
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| Q |
118 |
ccgggactaataattttatacggtggcgcggttaaaaagaaatgggcagtgaattcagcattcatgtcactctatgcatttgcatgtgtatttttctgtt |
217 |
Q |
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| T |
13350324 |
ccgggactaataattttatacggtggcgcggttaaaaagaaatgggcagtgaattcagcattcatgtcactctatgcatttgcatgtgtatttttctgtt |
13350225 |
T |
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| Q |
218 |
gggttttttgggcttatagaatgtcatttggtgatacacttcttccattttggggtaaaccagcacttgcacttgatgaaaagtatcttttcaagcaagc |
317 |
Q |
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| T |
13350224 |
gggttttttgggcttatagaatgtcatttggtgatacactttttccattttggggtaaaccagcacttgcacttgatgaaaagtatcttttcaagcaagc |
13350125 |
T |
|
| Q |
318 |
tttcttaggagcatttccaaatgctactatgatttattttcaatgtgtttttgctgctattactttgattttgatagctggtgctgtgttggggagaatg |
417 |
Q |
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| T |
13350124 |
tttcttaggagcatttccaaatgctactatgatttattttcaatgtgtttttgctgctattactttgattttgatagctggtgctgtgttggggagaatg |
13350025 |
T |
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| Q |
418 |
aacttctatgcttggatgatgtttgtgcctttatggctcactttctcttacacttttactgcttttagtatttggagtactaatggatttcttgctaaaa |
517 |
Q |
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| T |
13350024 |
aacttctatgcttggatgatgtttgtgcctttatggctcactttctcttacacttttactgcttttagtatttggagtactaatggatttcttgctaaaa |
13349925 |
T |
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| Q |
518 |
tgggaattattgattactctggtggttatgtcattcatttgtcttct |
564 |
Q |
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| T |
13349924 |
tgggaattatcgattactctggtggttatgtcattcatttgtcttct |
13349878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 25671423 - 25671322
Alignment:
| Q |
151 |
aaaaagaaatgggcagtgaattcagcattcatgtcactctatgcatttgcatgtgtatttttctgttgggttttttgggcttatagaatgtcatttggtg |
250 |
Q |
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| T |
25671423 |
aaaaagaaatgggcagtgaattcagctttcatggcactatatgcttttgcagcagtattaatctgttgggttcttgttgcttatagaatggcttttggtg |
25671324 |
T |
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| Q |
251 |
at |
252 |
Q |
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|| |
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| T |
25671323 |
at |
25671322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 492
Target Start/End: Original strand, 47501469 - 47501630
Alignment:
| Q |
331 |
tttccaaatgctactatgatttattttcaatgtgtttttgctgctattactttgattttgatagctggtgctgtgttggggagaatgaacttctatgctt |
430 |
Q |
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||||| |||||||| ||| | | || |||| ||||||| |||| | |||||||||||||||||||||||||| | | |||||||||||| | ||| | |
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| T |
47501469 |
tttcctaatgctacaatggtattttatcaaggtgttttcgctggtcttactttgattttgatagctggtgctttacttgggagaatgaacattcgtgcat |
47501568 |
T |
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| Q |
431 |
ggatgatgtttgtgcctttatggctcactttctcttacacttttactgcttttagtatttgg |
492 |
Q |
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| T |
47501569 |
ggatgttgtttgtgccactttgggttacattctcgtacactgttgttgcctttagtatttgg |
47501630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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