View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9730_low_8 (Length: 523)

Name: NF9730_low_8
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9730_low_8
NF9730_low_8
[»] chr2 (22 HSPs)
chr2 (176-499)||(14494428-14494751)
chr2 (175-494)||(14501914-14502233)
chr2 (176-494)||(14476139-14476457)
chr2 (176-506)||(14484974-14485304)
chr2 (186-506)||(14481309-14481629)
chr2 (194-499)||(14144664-14144969)
chr2 (178-506)||(14162229-14162557)
chr2 (186-506)||(14165289-14165609)
chr2 (194-501)||(14152646-14152953)
chr2 (401-488)||(14575161-14575248)
chr2 (429-488)||(14552198-14552257)
chr2 (428-488)||(15023623-15023683)
chr2 (441-491)||(14520122-14520172)
chr2 (401-476)||(14567209-14567284)
chr2 (438-488)||(14850744-14850794)
chr2 (442-484)||(15004186-15004228)
chr2 (112-145)||(14506893-14506926)
chr2 (435-475)||(14524880-14524920)
chr2 (436-469)||(13707181-13707214)
chr2 (428-484)||(14512269-14512325)
chr2 (428-484)||(14528719-14528775)
chr2 (428-484)||(14542945-14543001)
[»] chr3 (1 HSPs)
chr3 (429-488)||(38525073-38525132)
[»] chr4 (1 HSPs)
chr4 (441-484)||(49553376-49553419)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 176 - 499
Target Start/End: Original strand, 14494428 - 14494751
Alignment:
Q  176 cccattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaattt 275  Q
    |||||| || |||||||||||||| | ||||||| |||| ||||||||||||||| |||||||||||||||| ||||  |||||||| |||||||||| |    
T  14494428 cccatttccattttctctccatttatgcaccaacgcttctgattcaacctcttttgctgtctcatacctcattcacaagtttgggtttgacccacaatct 14494527  T
Q  276 gcttccaaactctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacaccc 375  Q
    |||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| || |||||||||||||| ||  |||    
T  14494528 gcttccaaactctgctccacttacaagctctgttttaagaatgcccaaaaacctgactctgttctcaacttctttaggaaccatggtttctctgattccc 14494627  T
Q  376 aactacgcgatatgattgcaaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttc 475  Q
    |||| | |||||  ||||| ||    ||| |||| |||||||   | |||||||||||| |  | || |||||||||||||||||||||||||| |||||    
T  14494628 aactgcacgataccattgccaagatgccagggctgctttcctgtaacccctccaaaagggtgttgcccaagtttcaattttttctctccaaaggcgcttc 14494727  T
Q  476 tacctctgacattattaaccttgt 499  Q
    ||||||||||||| ||||||||||    
T  14494728 tacctctgacattgttaaccttgt 14494751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 175 - 494
Target Start/End: Original strand, 14501914 - 14502233
Alignment:
Q  175 ccccattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatt 274  Q
    |||||||||| |||||||| ||||| | ||||||| |||||||||||||||| ||| ||||||||||||||||| ||| |||||| || |||||||||||    
T  14501914 ccccattaccattttctcttcatttctgcaccaacacttcagattcaacctcattttctgtctcatacctcatcaacaattttggctttgacccacaatt 14502013  T
Q  275 tgcttccaaactctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacc 374  Q
    ||||||||||||||||||||| ||||||||| ||||  | |||| |||||| ||||| ||||||||||| ||||| |||||| ||||||||||  || ||    
T  14502014 tgcttccaaactctgctccacctacaagctccgtttcaagactgaccaaaaccctgattctgttctcaaattctttagaaactatggtttctctaactcc 14502113  T
Q  375 caactacgcgatatgattgcaaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgctt 474  Q
    ||||||||   ||| ||| | ||  ||||| ||||||| |||| ||| |||||||||||| |  | || |||||||||||||||||||||||||||||||    
T  14502114 caactacgtcgtatcattcccaaggcaccatggctactctcctgcgacccctccaaaagggtgttgccgaagtttcaattttttctctccaaaggtgctt 14502213  T
Q  475 ctacctctgacattattaac 494  Q
    |||||||||||||| |||||    
T  14502214 ctacctctgacattgttaac 14502233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 176 - 494
Target Start/End: Complemental strand, 14476457 - 14476139
Alignment:
Q  176 cccattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaattt 275  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||| ||| |||||| || |||||||||| |    
T  14476457 cccattaccctttcctctccatttttgcaccaacacttcagattcaacctcttttgctgtctcctacctcatcaacaattttggctttgacccacaatct 14476358  T
Q  276 gcttccaaactctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacaccc 375  Q
    ||||||||||| | ||||||||||||  |   |||  | | |||||||||||||||||||||||||| |||||| |||||| |||||||||||||  |||    
T  14476357 gcttccaaactttcctccacttacaatgttactttcaagaatgcccaaaaacctgactctgttctcaccttctttagaaactatggtttctcagattccc 14476258  T
Q  376 aactacgcgatatgattgcaaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttc 475  Q
    |||||||  |||  ||| ||||   |||| |||| ||||||| | | || || |||||| || | |||||||||||||||||||||||||||||||||||    
T  14476257 aactacgtcataccatttcaaaggaaccatggctgctttcctgcaacccttctaaaagggttttgccaaagtttcaattttttctctccaaaggtgcttc 14476158  T
Q  476 tacctctgacattattaac 494  Q
    ||| ||||||||| |||||    
T  14476157 tacatctgacattgttaac 14476139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 176 - 506
Target Start/End: Original strand, 14484974 - 14485304
Alignment:
Q  176 cccattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaattt 275  Q
    ||||||||| ||||||| | |||||||||||||| ||||||||||||||| |||| | ||||| ||||||||| ||| |||||| ||   ||||||||||    
T  14484974 cccattaccattttctcactatttttccaccaacacttcagattcaaccttttttgccgtctcttacctcatcaacaattttggcttttccccacaattt 14485073  T
Q  276 gcttccaaactctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacaccc 375  Q
    ||||||||||| | ||||||||||||  |   |||  ||||||||| ||||||||| || |||||||||||||| ||||||||||||||||| ||  |||    
T  14485074 gcttccaaactttcctccacttacaatgttcatttcaaaactgcccgaaaacctgattcagttctcaacttctttagaaaccatggtttctctgattccc 14485173  T
Q  376 aactacgcgatatgattgcaaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttc 475  Q
    || |||||  | | ||||||||   |||| || | ||||| | ||||||||  |||||| |||| |||||||||||||||||||||||||||||||||||    
T  14485174 aaatacgcactgtcattgcaaaggaaccacggttgctttcatgcgatcccttgaaaagggttctgccaaagtttcaattttttctctccaaaggtgcttc 14485273  T
Q  476 tacctctgacattattaaccttgtcagtaag 506  Q
    || |||||||||| ||||| |||| ||||||    
T  14485274 taactctgacattgttaacattgttagtaag 14485304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 186 - 506
Target Start/End: Complemental strand, 14481629 - 14481309
Alignment:
Q  186 ttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaac 285  Q
    |||||||| | ||||| ||||||  |||||||||||||||||||| | ||||||||||||||| ||| |||||| ||   ||||||||||||||||||||    
T  14481629 ttttctcttcctttttgcaccaatacttcagattcaacctcttttgcagtctcatacctcatcaacaattttggcttttccccacaatttgcttccaaac 14481530  T
Q  286 tctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcga 385  Q
    | || |||||||||||| | |||||  ||||   |||||||||||| || ||| |||||||||| ||||||||||||||||||||||| |||||| |  |    
T  14481529 tttgttccacttacaaggtttgtttcaaaaccaaccaaaaacctgattcagttgtcaacttctttagaaaccatggtttctcagacactcaactatgtca 14481430  T
Q  386 tatgattgcaaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgac 485  Q
    ||| ||   |||   |||| | || ||||||| | | |||| ||||| | |  | |||||||||||||||| ||||||||||||||||||||||||||||    
T  14481429 tatcatcataaaggaaccacgacttctttcctgcaagccctgcaaaacgttgttgccaaagtttcaattttgtctctccaaaggtgcttctacctctgac 14481330  T
Q  486 attattaaccttgtcagtaag 506  Q
    ||||||||  ||||| |||||    
T  14481329 attattaaaattgtctgtaag 14481309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 194 - 499
Target Start/End: Original strand, 14144664 - 14144969
Alignment:
Q  194 ccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaactctgctcc 293  Q
    |||||| | ||||||| |||||||||||||||||||| | | ||| |||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||    
T  14144664 ccatttctgcaccaacccttcagattcaacctcttttgcagcctcctacctcattcacaattttgggtttgacccacaatttgcttccaaactatgctcc 14144763  T
Q  294 acttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcgatatgattg 393  Q
    ||| |    ||  ||||  |  |  ||||||||||||| |||||| ||| |||||| |||||| ||||||| |||||  |||||||||| ||| ||||||    
T  14144764 actcatcgtcttcgtttcaattccacccaaaaacctgaatctgttgtcaccttctttagaaactatggtttttcagattcccaactacgtgatctgattg 14144863  T
Q  394 caaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaa 493  Q
    | ||    ||| |||| ||||||| | | |||| ||||| | |  | ||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  14144864 ctaagatgccagggcttctttcctgcaaacccttcaaaacggtgttgccaaagtttcaattttttctctccaaaggtgcttctaactctgacattgttaa 14144963  T
Q  494 ccttgt 499  Q
    ||||||    
T  14144964 ccttgt 14144969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 178 - 506
Target Start/End: Complemental strand, 14162557 - 14162229
Alignment:
Q  178 cattacccttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgc 277  Q
    ||||||| |||||| | ||||| | ||| ||  ||||||||||| | || |||  ||| || || |||||||| | |||||| |||  ||||||||||||    
T  14162557 cattaccattttctttgcatttctgcactaaaacttcagattcaccttcatttgttgtgtcctatctcatccataattttggcttcaccccacaatttgc 14162458  T
Q  278 ttccaaactctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaa 377  Q
    ||| ||||||| |||| |||||||  |  ||||  | ||||| ||||||||||| ||||||||||  ||||| ||||  ||||||||||| ||| |||||    
T  14162457 ttctaaactcttctcctcttacaatgttcgtttcaacactgctcaaaaacctgattctgttctcagtttctttagaagtcatggtttctctgactcccaa 14162358  T
Q  378 ctacgcgatatgattgcaaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttcta 477  Q
     || |  ||||||||   ||  ||||| |||||||||||| ||| |||||||||||| |  | |||||||||||||||||||||||||||||||||||||    
T  14162357 ttatgtcatatgattatcaaggcaccatggctactttcctgcgacccctccaaaagggtgttgccaaagtttcaattttttctctccaaaggtgcttcta 14162258  T
Q  478 cctctgacattattaaccttgtcagtaag 506  Q
     |||||||||| |||||||||||||||||    
T  14162257 actctgacattgttaaccttgtcagtaag 14162229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 186 - 506
Target Start/End: Complemental strand, 14165609 - 14165289
Alignment:
Q  186 ttttctctccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaac 285  Q
    |||||||| ||||| | ||||||| ||||| |||||||||| ||| | | ||| |||||||| |||| |||||||||   ||||||||||||||||||||    
T  14165609 ttttctctacatttctgcaccaacacttcaaattcaacctcatttgcagcctcttacctcattcacaattttgggtttaccccacaatttgcttccaaac 14165510  T
Q  286 tctgctccacttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcga 385  Q
    |||| ||| || ||   ||  ||||  | ||  ||||||||||||| ||||||||||  ||||| |||||| |||||||||| ||  ||||||||||| |    
T  14165509 tctgttccgctcaccgtcttcgtttcaagaccacccaaaaacctgaatctgttctcacattctttagaaactatggtttctctgaatcccaactacgcca 14165410  T
Q  386 tatgattgcaaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgac 485  Q
    ||||||| | ||     |  |||| ||||| | |||||||||||||||| |  |  |||||||||||||||||||||||||||||||||||| |||||||    
T  14165409 tatgattcccaagatgtcgcggctgctttcttgcgatccctccaaaagggtgttagcaaagtttcaattttttctctccaaaggtgcttctaactctgac 14165310  T
Q  486 attattaaccttgtcagtaag 506  Q
    ||| |||||||||||| ||||    
T  14165309 attgttaaccttgtcactaag 14165289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 194 - 501
Target Start/End: Original strand, 14152646 - 14152953
Alignment:
Q  194 ccatttttccaccaactcttcagattcaacctcttttcctgtctcatacctcatccacacttttgggttcgacccacaatttgcttccaaactctgctcc 293  Q
    |||||| | ||||||| ||||||||||||||||| || | ||||| ||||||||| ||| |||||| || |||||||||| ||||||||||||||| |||    
T  14152646 ccatttctgcaccaacacttcagattcaacctctcttgcagtctcctacctcatcaacaattttggttttgacccacaatctgcttccaaactctgttcc 14152745  T
Q  294 acttacaagctctgttttgaaactgcccaaaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcgatatgattg 393  Q
    || ||| | ||  ||||  | ||  ||||||||||||| ||| ||||||  ||||| |||||| |||| |||||  |  ||||||||||| |||||||||    
T  14152746 acctaccatcttcgtttcaagaccacccaaaaacctgaatcttttctcacattctttagaaactatggattctctaattcccaactacgccatatgattg 14152845  T
Q  394 caaaatcaccaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaa 493  Q
    | ||    |||  ||| ||| ||| | | ||||||||||   |  | ||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||    
T  14152846 ccaagatgccagagctgcttacctgcaaaccctccaaaactgtgttgccaaagtttcaatttttcctctccagaggcgcttctacctctgacattgttaa 14152945  T
Q  494 ccttgtca 501  Q
    | ||||||    
T  14152946 cattgtca 14152953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 401 - 488
Target Start/End: Original strand, 14575161 - 14575248
Alignment:
Q  401 accaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 488  Q
    |||| |||| ||||||| |||| ||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14575161 accatggcttctttcctgcgatacccacaaaagaattctcccaaagtttcaatttttactctccaaaggtgcttctacctctgacatt 14575248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 429 - 488
Target Start/End: Original strand, 14552198 - 14552257
Alignment:
Q  429 aaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 488  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  14552198 aaaaggattctcccaaagtttcaatttttactctccataggtgcttcttcctctgacatt 14552257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 488
Target Start/End: Original strand, 15023623 - 15023683
Alignment:
Q  428 caaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 488  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  15023623 caaaacgattctcccaaagtttcaatttttactctccaaaggcgcttctacttctgacatt 15023683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 441 - 491
Target Start/End: Original strand, 14520122 - 14520172
Alignment:
Q  441 ccaaagtttcaattttttctctccaaaggtgcttctacctctgacattatt 491  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  14520122 ccaaagtttcaatttttactctccaaaggtgcttcttcctctgatattatt 14520172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 476
Target Start/End: Original strand, 14567209 - 14567284
Alignment:
Q  401 accaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttct 476  Q
    |||| |||| ||||||| |||| ||  ||||| |||||| ||||||||||||||||| ||| ||||||||||||||    
T  14567209 accatggcttctttcctgcgatacccacaaaacgattctaccaaagtttcaatttttactcgccaaaggtgcttct 14567284  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 488
Target Start/End: Complemental strand, 14850794 - 14850744
Alignment:
Q  438 ctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 488  Q
    |||||||||||||| |||||  ||||||||||||||||| |||||||||||    
T  14850794 ctcccaaagtttcagtttttaatctccaaaggtgcttcttcctctgacatt 14850744  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 484
Target Start/End: Complemental strand, 15004228 - 15004186
Alignment:
Q  442 caaagtttcaattttttctctccaaaggtgcttctacctctga 484  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  15004228 caaagtttcaattttttctatccaaaggtgcttcttcctctga 15004186  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 145
Target Start/End: Original strand, 14506893 - 14506926
Alignment:
Q  112 aaatgttgaatattcatcgttatagagtccttct 145  Q
    ||||||||||||||||||||||||||||||||||    
T  14506893 aaatgttgaatattcatcgttatagagtccttct 14506926  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 475
Target Start/End: Original strand, 14524880 - 14524920
Alignment:
Q  435 attctcccaaagtttcaattttttctctccaaaggtgcttc 475  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  14524880 attcttccaaagtttcaattttttctatccaaaggtgcttc 14524920  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Complemental strand, 13707214 - 13707181
Alignment:
Q  436 ttctcccaaagtttcaattttttctctccaaagg 469  Q
    |||||||||||||||||||||| |||||||||||    
T  13707214 ttctcccaaagtttcaatttttactctccaaagg 13707181  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 484
Target Start/End: Original strand, 14512269 - 14512325
Alignment:
Q  428 caaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctga 484  Q
    ||||||| || | |||||||||||||||||||| ||||| | ||||||| |||||||    
T  14512269 caaaaggtttttgccaaagtttcaattttttctatccaatgctgcttcttcctctga 14512325  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 484
Target Start/End: Original strand, 14528719 - 14528775
Alignment:
Q  428 caaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctga 484  Q
    ||||||| || | |||||||||||||||||||| ||||| | ||||||| |||||||    
T  14528719 caaaaggtttttgccaaagtttcaattttttctatccaatgctgcttcttcctctga 14528775  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 484
Target Start/End: Original strand, 14542945 - 14543001
Alignment:
Q  428 caaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctga 484  Q
    ||||||| || | |||||||||||||||||||| ||||| | ||||||| |||||||    
T  14542945 caaaaggtttttgccaaagtttcaattttttctatccaatgctgcttcttcctctga 14543001  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 429 - 488
Target Start/End: Complemental strand, 38525132 - 38525073
Alignment:
Q  429 aaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 488  Q
    |||||||||||||||||||||||||||||  |||||||||||| || |||||||||||||    
T  38525132 aaaaggattctcccaaagtttcaatttttaatctccaaaggtgtttttacctctgacatt 38525073  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 49553376 - 49553419
Alignment:
Q  441 ccaaagtttcaattttttctctccaaaggtgcttctacctctga 484  Q
    ||||||||||||||||| |||||||||||||||||||| |||||    
T  49553376 ccaaagtttcaatttttactctccaaaggtgcttctacttctga 49553419  T

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