View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9730_low_9 (Length: 502)
Name: NF9730_low_9
Description: NF9730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9730_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 494
Target Start/End: Original strand, 2621321 - 2621792
Alignment:
| Q |
18 |
ttgtgtatcttgatgtagtttgaatatcccttgtaatctgtttaatataattaatcaaactttgattataaaaaatgattcaacgaattaatgattgcta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2621321 |
ttgtgtatcttgatgtagtttgaatatcccttgtaatctgtttaat-----taatcaaactttgattataaaaaatgattcaacgaattaatgattgcta |
2621415 |
T |
|
| Q |
118 |
ttgtgctagttttgacactgatatagtccatgtgtttatatgaacagtatgatgtgtatgggaacctctttggacttcttgcagctcatccagtaactcc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2621416 |
ttgtgctagttttgacactgatatagtccatgtgtttatatgaacagtatgatgtgtatgggaacctctttgggcttcttgcagctcatccagtaactcc |
2621515 |
T |
|
| Q |
218 |
attggtatcactgcaccatcttgatgtggttgagccaatcttccctaatgccacaagagtagaagcacttcaacgacttacaataccaatgaagctcgac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2621516 |
attggtatcactgcaccatcttgatgtggttgagccaatcttccctaatgccacaagagtagaagcacttcaacgccttacaataccaatgaagctcgac |
2621615 |
T |
|
| Q |
318 |
tcagcaggactcattcaacaatccatctgctacgacaaagaaaagagatggactatttcagtttcatggggttttgctgttcaaatattccgcgggatat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2621616 |
tcagcaggactcattcaacaatccatctgctacgacaaagaaaagagatggactatttcagtttcatggggttttgctgttcaaatattccgcgggatat |
2621715 |
T |
|
| Q |
418 |
tttctccccgcgaaattgaaatgccttcaaggacattccttaattggtatagaagagctgattacactgcctatgct |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2621716 |
tttctccccgcgaaattgaaatgccttcaaggacattccttaattggtatagaagagctgattacactgcttatgct |
2621792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 159 - 493
Target Start/End: Complemental strand, 41317190 - 41316856
Alignment:
| Q |
159 |
gaacagtatgatgtgtatgggaacctctttggacttcttgcagctcatccagtaactccattggtatcactgcaccatcttgatgtggttgagccaatct |
258 |
Q |
| |
|
|||||||||||||||||||||||||| | || ||||||||| | ||||| || |||||||| || ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
41317190 |
gaacagtatgatgtgtatgggaacctgctcggtcttcttgcatcgcatccggtgactccattagtgtcactgcaccaccttgacgtggttgagccaatct |
41317091 |
T |
|
| Q |
259 |
tccctaatgccacaagagtagaagcacttcaacgacttacaataccaatgaagctcgactcagcaggactcattcaacaatccatctgctacgacaaaga |
358 |
Q |
| |
|
|||| |||| || | |||||||| || ||||| | ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
41317090 |
tccccaatgtgactcgcgtagaagccctccaacggttgacaataccaatgaagcttgactcagcagggctcatgcagcaatccatctgctacgacaaatc |
41316991 |
T |
|
| Q |
359 |
aaagagatggactatttcagtttcatggggttttgctgttcaaatattccgcgggatattttctccccgcgaaattgaaatgccttcaaggacattcctt |
458 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||||| |||||||| || | ||||| ||||| || || |||||||||||||| || ||| | |
|
|
| T |
41316990 |
aaagcactggactgtttctgtttcatggggttttgctgttcagatattccgtggcgtgttttcaccccgagagatggaaatgccttcaagaacgttcttg |
41316891 |
T |
|
| Q |
459 |
aattggtatagaagagctgattacactgcctatgc |
493 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
41316890 |
aattggtacagaagagcagattacactgcatatgc |
41316856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 456 - 493
Target Start/End: Complemental strand, 22775654 - 22775617
Alignment:
| Q |
456 |
cttaattggtatagaagagctgattacactgcctatgc |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22775654 |
cttaattggtatagaagagctgattacactgcttatgc |
22775617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 40944423 - 40944365
Alignment:
| Q |
435 |
gaaatgccttcaaggacattccttaattggtatagaagagctgattacactgcctatgc |
493 |
Q |
| |
|
|||||||| ||||| || || || ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
40944423 |
gaaatgccatcaagaacttttctgaattggtatagaagagctgattatactgcatatgc |
40944365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University