View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_high_12 (Length: 432)
Name: NF9731_high_12
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Original strand, 446367 - 446779
Alignment:
| Q |
20 |
gaacttgtagtaaaattaatatatattgataaaacacatactagacacaca----tatattgctgttaatttatttggttagatgtgagattgatagata |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
446367 |
gaacttgtagtaaaattaatatatattgataaaacacatactagacacacacacatatattgctgttaatttatttggttagatgtgagattgatagata |
446466 |
T |
|
| Q |
116 |
aatgttttcacnnnnnnn-ggttgtttgtgcagtgtgttgtatcaaaatttatattttgagggtctatatctatcttctgcttcaattgcaagtgccatg |
214 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
446467 |
aatcttttcacttttttttggttgtttgtgcagtgtgttgtatcaaaatttatattttgagggtctatatctatcttctgcttcaattgcaagtgccatg |
446566 |
T |
|
| Q |
215 |
aacaatcttattccagcaatcacatttgtaatagcagcctttgcagggtaaatttctaactacactcaacctatttttgttgccccatcaaattaattaa |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
446567 |
aacaatcttattccagcaatcacatttgtaatagcagcctttgcagggtaaatttctaactacactcaacctatttttgttgccccatcaaattaattaa |
446666 |
T |
|
| Q |
315 |
tatgaaattgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagtgat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
446667 |
tatgaaattgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaat |
446766 |
T |
|
| Q |
415 |
gtccatctcattg |
427 |
Q |
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||||||| ||||| |
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| T |
446767 |
gtccatcgcattg |
446779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 474543 - 474650
Alignment:
| Q |
157 |
tcaaaatttatattttgagggtctatatctatcttctgcttcaattgcaagtgccatgaacaatcttattccagcaatcacatttgtaatagcagccttt |
256 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||| ||||||| | || |
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| T |
474543 |
tcaaaatctatattttgagggtctatatctatcttcttcttcaattgcaagtgccatgaccaatcttattcctgcagtcacatttgttatagcagtcctt |
474642 |
T |
|
| Q |
257 |
gcagggta |
264 |
Q |
| |
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||| |||| |
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| T |
474643 |
gcaaggta |
474650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 455233 - 455335
Alignment:
| Q |
155 |
tatcaaaatttatattttgagggtctatatctatcttctgcttcaattgcaagtgccatgaacaatcttattccagcaatcacatttgtaatagcagcct |
254 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||| ||||| |||||||| |||||||| ||||||| |||||||||| |||||| ||| |
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| T |
455233 |
tatcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatgatcaatcttactccagcagtcacatttgttatagcaacct |
455332 |
T |
|
| Q |
255 |
ttg |
257 |
Q |
| |
|
||| |
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|
| T |
455333 |
ttg |
455335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 479878 - 479987
Alignment:
| Q |
156 |
atcaaaatttatattttgagggtctatatctatcttctgcttcaattgcaagtgccatgaacaatcttattccagcaatcacatttgtaatagcagcctt |
255 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||| ||||||||||| |||||||||||||| ||| ||| |||||||| |||||||||||||||||||||| |
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| T |
479878 |
atcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaaccttgttccagcagtcacatttgtaatagcagcctt |
479977 |
T |
|
| Q |
256 |
tgcagggtaa |
265 |
Q |
| |
|
|| ||||||| |
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|
| T |
479978 |
tgtagggtaa |
479987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 467514 - 467623
Alignment:
| Q |
156 |
atcaaaatttatattttgagggtctatatctatcttctgcttcaattgcaagtgccatgaacaatcttattccagcaatcacatttgtaatagcagcctt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||| |||| ||| ||||||||||||| |||||||| |
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|
| T |
467514 |
atcaaaatttatattttgagggtctatatctttcttcttcttcagttgcaagtgccatttccaatcttcttccggcagtcacatttgtaattgcagcctt |
467613 |
T |
|
| Q |
256 |
tgcagggtaa |
265 |
Q |
| |
|
| ||||||| |
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|
| T |
467614 |
agtagggtaa |
467623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 317 - 402
Target Start/End: Original strand, 467679 - 467764
Alignment:
| Q |
317 |
tgaaattgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgt |
402 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
467679 |
tgaaattgattatattacagaatggaaaaagtgaatattcgaagtataagaactatagccaaaatagtggggacaattatatgtgt |
467764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 327 - 410
Target Start/End: Original strand, 474723 - 474806
Alignment:
| Q |
327 |
tatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggag |
410 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| || ||| |||||||||||||||||| |
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| T |
474723 |
tatattacagaatggagaaagtcaacattcgaagtttgagaactatagccaaaatagtagggacattaatatgtgtttgtggag |
474806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 325 - 400
Target Start/End: Original strand, 480068 - 480143
Alignment:
| Q |
325 |
attatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgt |
400 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| | |||||| |
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| T |
480068 |
attatattacagaatggagaaagtaaatattcgaagtatgagaactatagccaaaatagtggggacagtgatatgt |
480143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 321 - 403
Target Start/End: Original strand, 455399 - 455481
Alignment:
| Q |
321 |
attgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtt |
403 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||| || ||||| ||||||||| |
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| T |
455399 |
attgaatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgtt |
455481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 402
Target Start/End: Complemental strand, 27491647 - 27491576
Alignment:
| Q |
331 |
ttacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgt |
402 |
Q |
| |
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||||||||||||| || | |||||| ||||| |||||||||||||||||||| | |||||||| ||| |||| |
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|
| T |
27491647 |
ttacagaatggagcaagtgaatattagaagtttgagaactatagccaaaataataggaacaattataggtgt |
27491576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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