View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_high_14 (Length: 395)
Name: NF9731_high_14
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_high_14 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 26657442 - 26657065
Alignment:
| Q |
18 |
tgcacatgtgctgatcagggaggctgcctcagatccgataaaggaccttggaaaaacccggaaattttgaaggttaggttatgtgttgtgctgtacttgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26657442 |
tgcacatgtgctgatcagggaggctgcctcagatccgataaaggaccttggaaaaacccggaaattttgaaggttaggttatgtgttgtgctgtacttgc |
26657343 |
T |
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| Q |
118 |
cttctgattgttcatcagatgatctactatatcaaatttgttacatgctaactgttaattgtatgcggaaaaacatttttcagatgattagtaaagcaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26657342 |
cttctgattgttcatcagatgatctactatatcaaatttgttacatgctaactgttaattgtatgcggaaaaacattttgcagatgattagtaaagcaag |
26657243 |
T |
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| Q |
218 |
gcaaccagggcaggcgataaaagttctaaatagggaagggaaggctgttgcacatgctaagccacgatgcccaatggtaatttgttgtatggttttcatt |
317 |
Q |
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| T |
26657242 |
gcaaccagggcaggcgataaaagttctaaatagtgaagggaaggctgttacacatgctaagccacgatgcccaatggtaatttgttgtatggttttcatt |
26657143 |
T |
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| Q |
318 |
atttggttgaaccaagtggagcctgtttcgattcatgttcctcttcagtgtccttttaatcttacgacttgatagatt |
395 |
Q |
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| T |
26657142 |
atttggttgaactgagtggagcctgtttcgattcatgttcctcttcagtgtccttttaatcttacgacttgatagatt |
26657065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 26642704 - 26642414
Alignment:
| Q |
18 |
tgcacatgtgctgatcagggaggctgcctcagatccgataaaggaccttggaaaaacccggaaattttgaaggttaggttatgtgttgtgctgtacttgc |
117 |
Q |
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||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26642704 |
tgcacatgtgccaatcatggaggttgcctcagatccgataaaggaccttggaaaaacccagaaattttgaaggttaggttatgtgttgtgctgtacttgc |
26642605 |
T |
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| Q |
118 |
cttctgattgttcatcagatgatctactatatcaaa-tttgttacatgctaactgttaattgtatgcggaaaaacatttttcagatgat------tagta |
210 |
Q |
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||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |
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| T |
26642604 |
cttctgatttttcatcggatgatctactatatcaaagcttgttacatgctaactgttaattgtatgcggaaaaacattttgcagatgattctcagtggta |
26642505 |
T |
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| Q |
211 |
aagcaaggcaaccagggcaggcgataaaagttctaaatagggaagggaaggctgttgcacatgctaagccacgatgcccaatggtaatttg |
301 |
Q |
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| T |
26642504 |
aagcaagacaaccagggcaagcggtaaaagttctaaacagtgaaggcaaggatgttgcacatgctaagctaccattccaaatggtaatttg |
26642414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 30 - 395
Target Start/End: Complemental strand, 26670496 - 26670130
Alignment:
| Q |
30 |
gatcagggaggctgcctcagatccgataaaggaccttggaaaaacccggaaattttgaaggttaggttatgtgttgtgctgtacttgccttctgattgtt |
129 |
Q |
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||||||||||| |||||||| ||||| ||||| || ||||| |||||||||||| ||||||| ||| |||||| || |||||| ||||||||| | |
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| T |
26670496 |
gatcagggaggatgcctcaggtccgacaaagggccctggaataacccggaaattatgaaggtaaggctatgtg-----ctttacttgtcttctgatttat |
26670402 |
T |
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| Q |
130 |
catcagatgatctactatatcaaatttgttacatgctaactgttaattgtatgcggaaaaacatttttcagatgatta------gtaaagcaaggcaacc |
223 |
Q |
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|||| |||||| |||||||||||| |||||||||| | |||||||||||||| || ||| || || ||||||||| || ||||| ||| || |
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| T |
26670401 |
catctgatgatgtactatatcaaacttgttacatggtcactgttaattgtatatggtcaaatatattgcagatgattctcagtggtgaagcagggcggcc |
26670302 |
T |
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| Q |
224 |
agggcaggcgataaaagttctaaatagggaagggaaggctgttgcacatgctaagccacgatgcccaatggtaatttgttgtatggttttcattatttgg |
323 |
Q |
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| T |
26670301 |
gaggcaggtggtaaaagttctaaacagtgaagggaaagttattgcatatgccaagccacgatgcccaatggtaatttcttgtctgattttcttaatttgc |
26670202 |
T |
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| Q |
324 |
ttgaaccaagtggagcctgtttcgattcatgttcctcttcagtgtccttttaatcttacgacttgatagatt |
395 |
Q |
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|||||| |||||||||||||| ||||| | ||||| ||||| |||||||| |||||| ||||||||||||| |
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| T |
26670201 |
ttgaactgagtggagcctgttttgattccttttccttttcagcgtccttttcatcttatgacttgatagatt |
26670130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 26663551 - 26663384
Alignment:
| Q |
18 |
tgcacatgtgctgatcagggaggctgcctcagatccgataaaggaccttggaaaaacccggaaattttgaaggttaggttatgtgttgtgctgtacttgc |
117 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| || ||||| |||| || ||||| | |
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| T |
26663551 |
tgcacatgtgcaaatcagggaggttgcctcagatccgataaaggaccttggaataaccctgaaattttgaaggttgggctatgtattgtactatacttac |
26663452 |
T |
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| Q |
118 |
cttctgattgttcatcagatgatctactatatcaaatttgttacatgctaactgttaattgtatgcgg |
185 |
Q |
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||||| |||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||||||| |
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| T |
26663451 |
cttcttattgttcatcaggtgatctactatatcaaatttattaaatgctaactgttaattatatgcgg |
26663384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 395
Target Start/End: Complemental strand, 26663357 - 26663224
Alignment:
| Q |
269 |
acatgctaagccacgatgcccaatggtaatttgttgtatggttttcattatttggttgaacca--------agtggagcctgtttcgattcatgttcctc |
360 |
Q |
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|||||||||||||| |||||||||||||||||||||| || || |||| ||||| |||| | |||||||| ||||| ||||| | ||||| |
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| T |
26663357 |
acatgctaagccaccatgcccaatggtaatttgttgtctgattctcat-atttgcctgaagccttgatctgagtggagcgtgttttgattccttttcctt |
26663259 |
T |
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| Q |
361 |
ttcagtgtccttttaatcttacgacttgatagatt |
395 |
Q |
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| T |
26663258 |
ttcagtgtccttttaatcttatgacttgattgatt |
26663224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 54780171 - 54780104
Alignment:
| Q |
24 |
tgtgctgatcagggaggctgcctcagatccgataaaggaccttggaaaaacccggaaattttgaaggt |
91 |
Q |
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| T |
54780171 |
tgtgcagatgagggaggatgccttagatctgataaaggaccatggaaaaatcctgaaatattgaaggt |
54780104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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