View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9731_high_18 (Length: 375)

Name: NF9731_high_18
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9731_high_18
NF9731_high_18
[»] chr6 (13 HSPs)
chr6 (18-375)||(15390119-15390474)
chr6 (18-195)||(20531388-20531560)
chr6 (18-151)||(5487828-5487959)
chr6 (109-214)||(25713021-25713129)
chr6 (114-202)||(5995922-5996009)
chr6 (109-173)||(12452444-12452508)
chr6 (114-216)||(13491148-13491251)
chr6 (114-195)||(14474877-14474959)
chr6 (114-202)||(19827350-19827441)
chr6 (154-216)||(25692301-25692364)
chr6 (154-216)||(25698942-25699005)
chr6 (21-69)||(33299550-33299599)
chr6 (18-74)||(25713151-25713207)
[»] chr2 (9 HSPs)
chr2 (18-375)||(35039051-35039405)
chr2 (207-370)||(21069289-21069454)
chr2 (18-151)||(20365446-20365578)
chr2 (212-307)||(29755337-29755432)
chr2 (114-185)||(25495134-25495204)
chr2 (114-202)||(26732612-26732702)
chr2 (118-194)||(34528847-34528924)
chr2 (118-194)||(34542821-34542898)
chr2 (109-185)||(17685926-17686001)
[»] chr5 (2 HSPs)
chr5 (18-375)||(20397137-20397495)
chr5 (18-375)||(20371434-20371771)
[»] chr1 (7 HSPs)
chr1 (212-375)||(2334844-2335007)
chr1 (18-195)||(28992041-28992211)
chr1 (18-195)||(23951495-23951668)
chr1 (109-216)||(13451328-13451441)
chr1 (114-195)||(13804842-13804924)
chr1 (109-175)||(11949695-11949762)
chr1 (41-74)||(41745401-41745434)
[»] scaffold0484 (1 HSPs)
scaffold0484 (212-375)||(10398-10561)
[»] chr8 (4 HSPs)
chr8 (18-202)||(17528346-17528526)
chr8 (114-202)||(16774556-16774644)
chr8 (88-175)||(17128642-17128729)
chr8 (18-74)||(26872127-26872183)
[»] scaffold1904 (1 HSPs)
scaffold1904 (18-202)||(865-1046)
[»] chr3 (15 HSPs)
chr3 (18-202)||(18954288-18954469)
chr3 (18-202)||(18950342-18950523)
chr3 (263-375)||(15910202-15910314)
chr3 (263-375)||(15924445-15924557)
chr3 (109-216)||(2255894-2256006)
chr3 (114-185)||(50825861-50825931)
chr3 (114-185)||(50849929-50849999)
chr3 (114-216)||(15693871-15693974)
chr3 (114-216)||(15696185-15696288)
chr3 (109-175)||(18040411-18040477)
chr3 (114-216)||(15710487-15710590)
chr3 (173-216)||(3711117-3711161)
chr3 (88-185)||(9184536-9184630)
chr3 (41-74)||(14537315-14537348)
chr3 (114-166)||(28469032-28469085)
[»] scaffold0094 (1 HSPs)
scaffold0094 (263-375)||(29550-29662)
[»] chr7 (5 HSPs)
chr7 (109-216)||(17740167-17740278)
chr7 (114-202)||(1887707-1887797)
chr7 (114-202)||(1901808-1901898)
chr7 (116-185)||(4662674-4662742)
chr7 (114-202)||(24186906-24186996)
[»] scaffold0497 (1 HSPs)
scaffold0497 (114-202)||(12052-12139)
[»] scaffold0091 (1 HSPs)
scaffold0091 (109-185)||(19132-19207)
[»] chr4 (8 HSPs)
chr4 (114-202)||(1890456-1890544)
chr4 (114-185)||(10639707-10639778)
chr4 (114-202)||(1876341-1876429)
chr4 (119-202)||(772489-772573)
chr4 (114-165)||(52297241-52297292)
chr4 (18-74)||(12426115-12426171)
chr4 (117-195)||(20866600-20866676)
chr4 (114-166)||(21531127-21531180)
[»] scaffold0027 (1 HSPs)
scaffold0027 (114-185)||(64225-64295)
[»] scaffold0039 (1 HSPs)
scaffold0039 (114-185)||(39403-39474)
[»] scaffold0278 (2 HSPs)
scaffold0278 (109-183)||(9754-9828)
scaffold0278 (18-74)||(9859-9915)
[»] scaffold0431 (1 HSPs)
scaffold0431 (18-74)||(3804-3860)
[»] scaffold0016 (1 HSPs)
scaffold0016 (109-174)||(24943-25008)
[»] scaffold0007 (1 HSPs)
scaffold0007 (41-74)||(20173-20206)


Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 15390119 - 15390474
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatannnnnnngtaatttttagagagattttcaaaagtgaaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  15390119 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatatttttta-taatttttagagagattttcaaaagtgaaag 15390217  T
Q  118 aggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaacgggtcggttcgggttactgga 217  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15390218 agatgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttt-aaaaacaattgggcttaagcaaaaacgggtcggttcgggttactgga 15390316  T
Q  218 gcgggtcatcaggttaaacattagccgcatgattaagatcagacagattaagatcggacagctttggttcaatcatgcagaggagcaacacagaccacag 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||    
T  15390317 gcgggtcatcaggttaaacattagccgcatgattaagatcagacagattaagatcggacagctttggttcaaacatgcagaggagcaacatagatcacag 15390416  T
Q  318 gatcaaagattcaaaggacaagggtgcgtgggtgtatggtaaggccgtacacccacgc 375  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15390417 gatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgc 15390474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 20531388 - 20531560
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatannnnnnngtaatttttagagagattttcaaaagtgaaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||    
T  20531388 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacata--tttttgtaatttttagagagattttcaaaaatgaaag 20531485  T
Q  118 aggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaa 195  Q
    ||||| ||||||| ||||||||||||||| || | |||||||||||||  |  |||||| ||||||||||||||||||    
T  20531486 aggtgtagaaagt-aaaacaggggtataactagcgaaactgtagtgaa--taaaaaaacgattgggcttaagcaaaaa 20531560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 5487828 - 5487959
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatannnnnnngtaatttttagagagattttcaaaagtgaaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||    
T  5487828 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacata-ttttttgtaatttttagagagattttctaaagtgaaag 5487926  T
Q  118 aggtgcagaaagtaaaaacaggggtataattaac 151  Q
    ||||||||||||| ||||||||||| ||||||||    
T  5487927 aggtgcagaaagt-aaaacaggggtttaattaac 5487959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 25713129 - 25713021
Alignment:
Q  109 aagtgaaagaggtgcagaaagtaaaaa--caggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagc--aaaaacgggtcggt 204  Q
    ||||||||| |||||||||||||||||  ||| |||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||| |||||    
T  25713129 aagtgaaaggggtgcagaaagtaaaaaaacagaggtataattaacaaaactgtagtgaa-ttttaaaagcaattgggcttaagcaaaaaaacggttcggt 25713031  T
Q  205 tcgggttact 214  Q
    ||||||||||    
T  25713030 tcgggttact 25713021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 5996009 - 5995922
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaacgggtcg 202  Q
    ||||||||||||||||||||||||| ||| |||| || ||||||||||||||  || |||| |||||||||||||||||||||||||||    
T  5996009 aaagaggtgcagaaagtaaaaacagaggtgtaatcaataaaactgtagtgaa-attaaaaagcaattgggcttaagcaaaaacgggtcg 5995922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 12452444 - 12452508
Alignment:
Q  109 aagtgaaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaa 173  Q
    ||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  12452444 aagtgaaagagttgcagaaagtaaaaacagaggtgtaattaataaaactgtagtgaatttttaaa 12452508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 13491251 - 13491148
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaa--cgggtcggttcgggtt 211  Q
    ||||||||||||||||||||||||| |||   | ||  ||||| |||||||||||| |||||| ||| ||||||||||||||  ||||||||||||| ||    
T  13491251 aaagaggtgcagaaagtaaaaacagtggtgacaatagtaaaacagtagtgaattttaaaaaac-atttggcttaagcaaaaaaccgggtcggttcggatt 13491153  T
Q  212 actgg 216  Q
    |||||    
T  13491152 actgg 13491148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 14474959 - 14474877
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaa-aaacaattgggcttaagcaaaaa 195  Q
    |||| |||||||||||||||||||| ||| |||||| ||||||||||||||| ||  ||  ||||| ||||||||||||||||    
T  14474959 aaaggggtgcagaaagtaaaaacagaggtgtaattagcaaaactgtagtgaaattaaaaggaacaactgggcttaagcaaaaa 14474877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 19827350 - 19827441
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaa---aacaattgggcttaagcaaaaacgggtcg 202  Q
    |||| ||||||||||| |||||||| ||| ||||||| |||||||||||||| ||  |||   ||||| |||||||||||| ||||||||||    
T  19827350 aaaggggtgcagaaagcaaaaacagaggtgtaattaataaaactgtagtgaaattaaaaagggaacaactgggcttaagcagaaacgggtcg 19827441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 25692364 - 25692301
Alignment:
Q  154 aactgtagtgaatttttaaaaacaattgggcttaagca--aaaacgggtcggttcgggttactgg 216  Q
    |||||||||||||||| |||| ||||||||||||||||  ||||||| |||||||||||||||||    
T  25692364 aactgtagtgaatttt-aaaagcaattgggcttaagcaaaaaaacggttcggttcgggttactgg 25692301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 25699005 - 25698942
Alignment:
Q  154 aactgtagtgaatttttaaaaacaattgggcttaagca--aaaacgggtcggttcgggttactgg 216  Q
    |||||||||||||||| |||| ||||||||||||||||  ||||||| |||||||||||||||||    
T  25699005 aactgtagtgaatttt-aaaagcaattgggcttaagcaaaaaaacggttcggttcgggttactgg 25698942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 33299599 - 33299550
Alignment:
Q  21 tatactacaataataatgacaaaacagtaaat-aaacaattaacacaaag 69  Q
    |||||||||||||||| || |||||||||||| |||||||||||||||||    
T  33299599 tatactacaataataacgataaaacagtaaataaaacaattaacacaaag 33299550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 25713207 - 25713151
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaa 74  Q
    |||||||||| || |||||| | |||||||||||||||  |||||||||||| ||||    
T  25713207 aaatatactataacaataataaaaaaacagtaaataaatgattaacacaaagtaaaa 25713151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 35039405 - 35039051
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatannnnnnngtaatttttagagagattttcaaaagtgaaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |       ||||||||||||||||||||||||||||||||    
T  35039405 aaatatactacaataataatgacaaaacagtaaataaacaattaatacaaagcaaaa-acatatttttgtaatttttagagagattttcaaaagtgaaag 35039307  T
Q  118 aggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaacgggtcggttcgggttactgga 217  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35039306 aggtgcagaaagtaaaa-caggggtataattaacaaaactgtagtgaatttt-aaaaacaattgggcttaagcaaaaacgggtcggttcgggttactgga 35039209  T
Q  218 gcgggtcatcaggttaaacattagccgcatgattaagatcagacagattaagatcggacagctttggttcaatcatgcagaggagcaacacagaccacag 317  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35039208 gcgggtcattaggttaaacattagccgcatgattaagatcagacagattaagatcggacagctttggttcaatcatgcagaggagcaacatagaccacag 35039109  T
Q  318 gatcaaagattcaaaggacaagggtgcgtgggtgtatggtaaggccgtacacccacgc 375  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  35039108 gatcaaagattcaaagaacaagggtgcgtgggtgcatggtaaggccgtacacccacgc 35039051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 207 - 370
Target Start/End: Complemental strand, 21069454 - 21069289
Alignment:
Q  207 gggttactggagcgggtcatcaggttaaacattagccgcatgattaagatcagacagattaagatcggacagctttggttcaatcatgcagaggagcaac 306  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21069454 gggtaactggagcgggtcatcaggttaaacattagccgcatgattaagatcagacagattaagatcggacagctttggttcaatcatgcagaggagcaac 21069355  T
Q  307 acagaccacaggatcaaa--gattcaaaggacaagggtgcgtgggtgtatggtaaggccgtacacc 370  Q
    | ||||||||||||||||   | |||||||||||||||||||||||| ||||||||| ||||||||    
T  21069354 atagaccacaggatcaaaacaaatcaaaggacaagggtgcgtgggtgcatggtaaggtcgtacacc 21069289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 20365446 - 20365578
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatannnnnnngtaatttttagagagattttcaaaagtgaaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  20365446 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatatttttttgtaatttttagagagattttcaaaagtgaaag 20365545  T
Q  118 aggtgcagaaagtaaaaacaggggtataattaac 151  Q
    | ||||||||||| ||||||||||||||||||||    
T  20365546 aagtgcagaaagt-aaaacaggggtataattaac 20365578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 212 - 307
Target Start/End: Complemental strand, 29755432 - 29755337
Alignment:
Q  212 actggagcgggtcatcaggttaaacattagccgcatgattaagatcagacagattaagatcggacagctttggttcaatcatgcagaggagcaaca 307  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29755432 actggagcgggtcattaggttaaacattagccgcatgattaaaatcagacagattaagatcagacagctttggttcaatcatgcagaggagcaaca 29755337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 25495204 - 25495134
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggct 185  Q
    ||||||||||||||||||||||||| ||| |||| || ||||||||||||||  || |||||||||||||||    
T  25495204 aaagaggtgcagaaagtaaaaacagaggtgtaatcaataaaactgtagtgaa-attaaaaaacaattgggct 25495134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 26732612 - 26732702
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaa--aacaattgggcttaagcaaaaacgggtcg 202  Q
    |||| ||||||||||| |||||||| ||| ||||||| | |||||||||||| ||  |||  ||||| |||||||||||| ||||||||||    
T  26732612 aaaggggtgcagaaagcaaaaacagaggtgtaattaatacaactgtagtgaaattaaaaaggaacaactgggcttaagcagaaacgggtcg 26732702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 34528847 - 34528924
Alignment:
Q  118 aggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaa-aacaattgggcttaagcaaaa 194  Q
    ||||||||||||| ||||||| ||| ||||||| |||| ||||||||| ||  ||| || |||||||||||| |||||    
T  34528847 aggtgcagaaagtgaaaacagaggtgtaattaataaaattgtagtgaaattaaaaagaataattgggcttaaccaaaa 34528924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 34542821 - 34542898
Alignment:
Q  118 aggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaa-aacaattgggcttaagcaaaa 194  Q
    ||||||||||||| ||||||| ||| ||||||| |||| ||||||||| ||  ||| || |||||||||||| |||||    
T  34542821 aggtgcagaaagtgaaaacagaggtgtaattaataaaattgtagtgaaattaaaaagaataattgggcttaaccaaaa 34542898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 17685926 - 17686001
Alignment:
Q  109 aagtgaaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggct 185  Q
    ||||||| |||||||||||||||||||||  ||| |||  |  ||||| ||||||||  ||||||||||||||||||    
T  17685926 aagtgaaggaggtgcagaaagtaaaaacaaaggtgtaaaaaggaaaacagtagtgaa-atttaaaaacaattgggct 17686001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 20397137 - 20397495
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatannnnnnngtaatttttagagagattttcaaaagtgaaag 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  20397137 aaatatactacaataataatgacaaaacagtaaataaccaattaacacaaagcaaaacat-gttttttgtaatttttagagagattttcaaaagtgaaag 20397235  T
Q  118 aggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaa--ttgggcttaagcaaaaacgggtcggttcgggttactg 215  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||||||||    
T  20397236 aggtggagaaagtaaaaacaggggtataattaacaaaattgtagtgaattttaaaaaaaaaaattgggcttaagcaaaaacgggtcggttcgggttactg 20397335  T
Q  216 gagcgggtcatcaggttaaacattagccgcatgattaagatcagacagattaagatcggacagctttggttcaatcatgcagaggagcaacacagaccac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  20397336 gagcgggtcatcaggttaaacattagccgcatgattaagatcagacagattaagatcagacagctttggttcaatcatgcagaggagcaacatagaccac 20397435  T
Q  316 aggatcaaagattcaaaggacaagggtgcgtgggtgtatggtaaggccgtacacccacgc 375  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||    
T  20397436 aggatcaaagattcaaaggacaagggtgtgtgggtgcatggtaaggccatacacccacgc 20397495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 20371434 - 20371771
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatannnnnnngtaatttttagagagattttcaaaagtgaaag 117  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||       |||||||||||||||||||| |||||||||||    
T  20371434 aaatatactacaataataatgacaaaatagtaaataaccaattaacacaaagcaaaacatatttttt-gtaatttttagagagattttaaaaagtgaaag 20371532  T
Q  118 aggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaacgggtcggttcgggttactgga 217  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  20371533 aggtggagaaagtaaaaacaggggtataattaacaaaactgtagtgaattttaaaaaaaaattgggcttaagcaaaaacgggtcggttcgggttactgga 20371632  T
Q  218 gcgggtcatcaggttaaacattagccgcatgattaagatcagacagattaagatcggacagctttggttcaatcatgcagaggagcaacacagaccacag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||| |||||||||    
T  20371633 gcgggtcatcaggttaaacattagccgcatgattaagatcagacagattaagatcgga-------------------cagaggagcaacatagaccacag 20371713  T
Q  318 gatcaaagattcaaaggacaagggtgcgtgggtgtatggtaaggccgtacacccacgc 375  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||    
T  20371714 gatcaaagattcaaaggacaagggtgtgtgggtgcatggtaaggccatacacccacgc 20371771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 212 - 375
Target Start/End: Original strand, 2334844 - 2335007
Alignment:
Q  212 actggagcgggtcatcaggttaaacattagccgcatgattaagatcagacagattaagatcggacagctttggttcaatcatgcagaggagcaacacaga 311  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  2334844 actggagcgggttatcaggttaaacattagcctcatgattaagatcagacagattaagatcggacagctttggttcaatcatgcagaggagcagcataga 2334943  T
Q  312 ccacaggatcaaagattcaaaggacaagggtgcgtgggtgtatggtaaggccgtacacccacgc 375  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2334944 ccacaggatcaaagattcaaaggacaagggtgcgtgggtgcatggtaaggccgtacacccacgc 2335007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 28992041 - 28992211
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatannnnnnngtaatttttagagagattttcaaaagtgaaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||    
T  28992041 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatattttt--gtaatttttagagagattttcaaaaatgaaag 28992138  T
Q  118 aggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaa 195  Q
    ||||||||||||| |||| |||||||||| || | |||||||||||||    ||||||||||||||||||||||||||    
T  28992139 aggtgcagaaagt-aaaataggggtataactagcgaaactgtagtgaa----taaaaacaattgggcttaagcaaaaa 28992211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 23951668 - 23951495
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatannnnnnngtaatttttagagagattttcaaaagtgaaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||    
T  23951668 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacata--tttttgtaatttttagagagattttcaaaaatgaaag 23951571  T
Q  118 aggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaa 195  Q
     |||||||||||| |||| |||||||||| || ||||||||||||||| |   |||||||||||||||||||||||||    
T  23951570 tggtgcagaaagt-aaaataggggtataactagcaaaactgtagtgaa-taaaaaaaacaattgggcttaagcaaaaa 23951495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 13451441 - 13451328
Alignment:
Q  109 aagtgaaagaggtgcagaaagtaaaaa--caggggtataattaacaaaactgtagtgaatttt----taaaaacaattgggcttaagcaaaaacgggtcg 202  Q
    ||||||||  |||||||||||||||||  ||| ||| ||||||||||||||||||||||||||     |||||||||||||||||||||| ||||| |||    
T  13451441 aagtgaaaagggtgcagaaagtaaaaaaacagaggtgtaattaacaaaactgtagtgaattttaaaaaaaaaacaattgggcttaagcaagaacggttcg 13451342  T
Q  203 gttcgggttactgg 216  Q
    ||||||||||||||    
T  13451341 gttcgggttactgg 13451328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 13804842 - 13804924
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaa-aaacaattgggcttaagcaaaaa 195  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||  ||  ||||| ||||||||||||||||    
T  13804842 aaaggggtgcagaaagtaaaaacagaggtgtaattaacaaaactgtagtgaaattaaaaggaacaactgggcttaagcaaaaa 13804924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 11949762 - 11949695
Alignment:
Q  109 aagtgaaagaggtgcagaaagtaaaaa-caggggtataattaacaaaactgtagtgaatttttaaaaa 175  Q
    ||||||||||||||| ||||||||||| ||| ||| ||||||| |||||||||||||||||| |||||    
T  11949762 aagtgaaagaggtgcggaaagtaaaaaacagaggtgtaattaataaaactgtagtgaattttaaaaaa 11949695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 41745401 - 41745434
Alignment:
Q  41 aaaacagtaaataaacaattaacacaaagcaaaa 74  Q
    |||||||||||| |||||||||||||||||||||    
T  41745401 aaaacagtaaatgaacaattaacacaaagcaaaa 41745434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 212 - 375
Target Start/End: Original strand, 10398 - 10561
Alignment:
Q  212 actggagcgggtcatcaggttaaacattagccgcatgattaagatcagacagattaagatcggacagctttggttcaatcatgcagaggagcaacacaga 311  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  10398 actggagcgggtaatcaggttaaatattagccgcatgattaagatcagacatattaagatcggacagctttggttcaatcatgcagaggagcaacataga 10497  T
Q  312 ccacaggatcaaagattcaaaggacaagggtgcgtgggtgtatggtaaggccgtacacccacgc 375  Q
    ||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  10498 ccacaagatcaaagattcaaaggacaagggtgcatgggtgcatggtaaggccgtacacccacgc 10561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 17528526 - 17528346
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatannnnnnngtaatttttagagagattttcaaaagtgaaag 117  Q
    |||||||||||||||||||||||||||||||||     |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  17528526 aaatatactacaataataatgacaaaacagtaa-----caattaacacaaagcaaaacatatttttttgtaatttttagagagattttcaaaagtgaaag 17528432  T
Q  118 aggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttt-taaaaacaattgggcttaagcaaaaacgggtcg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  17528431 aggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaattttaaaaaaacaatcgggcttaagcaaaaacgggtcg 17528346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 16774644 - 16774556
Alignment:
Q  114 aaagaggtgcagaaagtaaaaa-caggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaacgggtcg 202  Q
    |||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||    
T  16774644 aaaggggtgcagaaagtaaaaaacagaggtgtaattaacaaaactgtagtgaa-atttgaaaacaattgggcttaggcaaaaacgggtcg 16774556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 17128729 - 17128642
Alignment:
Q  88 aatttttagagagattttcaaaagtgaaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaa 175  Q
    |||||||||| | |||||   |||||||||||||||||||||| |||| || ||| ||||||||||||| ||||||||| || |||||    
T  17128729 aatttttagaaaaatttttgtaagtgaaagaggtgcagaaagtgaaaatagaggtgtaattaacaaaacagtagtgaatgttaaaaaa 17128642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 26872127 - 26872183
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaa 74  Q
    |||||||||| || |||||| | |||||||||||||||  |||||||||||| ||||    
T  26872127 aaatatactataacaataataaaaaaacagtaaataaatgattaacacaaagtaaaa 26872183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1904 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold1904
Description:

Target: scaffold1904; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 1046 - 865
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatannnnnnn-gtaatttttagagagattttcaaaagtgaaa 116  Q
    |||||||||||||||||||||||||||||||||     || ||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  1046 aaatatactacaataataatgacaaaacagtaa-----cacttaacacaaagcaaaacatattttttttgtaatttttagagagattttcaaaagtgaaa 952  T
Q  117 gaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttt-taaaaacaattgggcttaagcaaaaacgggtcg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  951 gaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaattttaaaaaaacaattgggcttaagcaaaaacgggtcg 865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 18954288 - 18954469
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatannnnnnngtaatttttagagagattttcaaaagtgaaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  18954288 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatattttt--gtaatttttagagagattttcaaaagtgaaag 18954385  T
Q  118 aggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaa-aaacgggtcg 202  Q
    ||||||||||||| ||||||||||||||| || | ||||||||||||| |   |||||||||||||||||||||| ||||||||||    
T  18954386 aggtgcagaaagt-aaaacaggggtataactagcgaaactgtagtgaa-taaaaaaaacaattgggcttaagcaacaaacgggtcg 18954469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 18950342 - 18950523
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatannnnnnngtaatttttagagagattttcaaaagtgaaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||    
T  18950342 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaacatattttt--gtaatttttagagagattttcaaaaatgaaag 18950439  T
Q  118 aggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaa-aaacgggtcg 202  Q
    ||||||||||||| ||||||||||||||| || | ||||||||||||| |   |||||||||||||||||||||| ||||||||||    
T  18950440 aggtgcagaaagt-aaaacaggggtataactagcgaaactgtagtgaa-taaaaaaaacaattgggcttaagcaacaaacgggtcg 18950523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 263 - 375
Target Start/End: Complemental strand, 15910314 - 15910202
Alignment:
Q  263 gattaagatcggacagctttggttcaatcatgcagaggagcaacacagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgtatggtaaggc 362  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||| ||||||||||| || |||| |||||    
T  15910314 gattaagatcagacagctttggttcaatcatgcagaggagcaacatagaccacaggatcaaaggatcaaaggaccagggtgcgtggatgcatggcaaggc 15910215  T
Q  363 cgtacacccacgc 375  Q
    |||||||||||||    
T  15910214 cgtacacccacgc 15910202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 263 - 375
Target Start/End: Complemental strand, 15924557 - 15924445
Alignment:
Q  263 gattaagatcggacagctttggttcaatcatgcagaggagcaacacagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgtatggtaaggc 362  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||| ||||||||||| |  |||| |||||    
T  15924557 gattaagatcagacagctttggttcaatcatgcagaggagcaacatagaccacaggatcaaaggatcaaaggaccagggtgcgtggatccatggcaaggc 15924458  T
Q  363 cgtacacccacgc 375  Q
    |||||||||||||    
T  15924457 cgtacacccacgc 15924445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 2256006 - 2255894
Alignment:
Q  109 aagtgaaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaa--aaacaattgggcttaagc---aaaaacgggtcgg 203  Q
    ||||||| ||| ||||||||||||| |||| || |||||||| |||| |||| | |||||||||  ||||||||||||||||||   |||||||||| ||    
T  2256006 aagtgaaggagttgcagaaagtaaagacagaggcataattaataaaattgtaattaatttttaaagaaacaattgggcttaagcaaaaaaaacgggttgg 2255907  T
Q  204 ttcgggttactgg 216  Q
    |||||||||||||    
T  2255906 ttcgggttactgg 2255894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 50825931 - 50825861
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggct 185  Q
    ||||||||||||||||||||||||| ||| ||||||| |||| |||||||||  ||||||||||||||||||    
T  50825931 aaagaggtgcagaaagtaaaaacagaggtgtaattaataaaattgtagtgaa-atttaaaaacaattgggct 50825861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 50849929 - 50849999
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggct 185  Q
    ||||||||||||||||||||||||| ||| ||||||| |||| |||||||||  ||||||||||||||||||    
T  50849929 aaagaggtgcagaaagtaaaaacagaggtgtaattaataaaattgtagtgaa-atttaaaaacaattgggct 50849999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 15693974 - 15693871
Alignment:
Q  114 aaagaggtgcagaaagtaaaa-acaggggtataattaacaaaactgtagtga-atttttaaaaacaattgggcttaagcaaaaacgggtcggttcgggtt 211  Q
    ||||| ||||||||||||||| |||| ||| | ||||| || |||||||||| |||   |||||||||||||||||||| ||||||| ||||||||||||    
T  15693974 aaagatgtgcagaaagtaaaagacagaggtgtgattaataagactgtagtgagattaaaaaaaacaattgggcttaagc-aaaacggttcggttcgggtt 15693876  T
Q  212 actgg 216  Q
    |||||    
T  15693875 actgg 15693871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 15696288 - 15696185
Alignment:
Q  114 aaagaggtgcagaaagtaaaa-acaggggtataattaacaaaactgtagtga-atttttaaaaacaattgggcttaagcaaaaacgggtcggttcgggtt 211  Q
    ||||| ||||||||||||||| |||| ||| | ||||| || |||||||||| |||   |||||||||||||||||||| ||||||| ||||||||||||    
T  15696288 aaagatgtgcagaaagtaaaagacagaggtgtgattaataagactgtagtgagattaaaaaaaacaattgggcttaagc-aaaacggttcggttcgggtt 15696190  T
Q  212 actgg 216  Q
    |||||    
T  15696189 actgg 15696185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 18040477 - 18040411
Alignment:
Q  109 aagtgaaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaa 175  Q
    |||||||| ||||| ||||||||||||||| ||  ||||||||||||| |||||||||||| |||||    
T  18040477 aagtgaaacaggtggagaaagtaaaaacagaggcgtaattaacaaaacagtagtgaattttaaaaaa 18040411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 15710590 - 15710487
Alignment:
Q  114 aaagaggtgcagaaagtaaaa-acaggggtataattaacaaaactgtagtga-atttttaaaaacaattgggcttaagcaaaaacgggtcggttcgggtt 211  Q
    ||||| ||||||||||||||| |||| ||| | ||||| || |||||||||| |||   |||||||||||||||||||| ||||||| | ||||||||||    
T  15710590 aaagatgtgcagaaagtaaaagacagaggtgtgattaataagactgtagtgagattaaaaaaaacaattgggcttaagc-aaaacggtttggttcgggtt 15710492  T
Q  212 actgg 216  Q
    |||||    
T  15710491 actgg 15710487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 3711161 - 3711117
Alignment:
Q  173 aaacaattgggcttaagca-aaaacgggtcggttcgggttactgg 216  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  3711161 aaacaattgggcttaagcaaaaaacgggccggttcgggttactgg 3711117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 9184536 - 9184630
Alignment:
Q  88 aatttttagagagattttcaaaagtgaaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggct 185  Q
    |||||||||||| |||||   |||| ||| |||| |||||||||||||||| ||| |||  || ||||| |||||||| ||| |||| ||||||||||    
T  9184536 aatttttagagaaatttt---aagtaaaaaaggttcagaaagtaaaaacagaggtgtaaaaaagaaaacagtagtgaaatttaaaaagcaattgggct 9184630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 14537315 - 14537348
Alignment:
Q  41 aaaacagtaaataaacaattaacacaaagcaaaa 74  Q
    |||||||||||| |||||||||||||||||||||    
T  14537315 aaaacagtaaatgaacaattaacacaaagcaaaa 14537348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 28469032 - 28469085
Alignment:
Q  114 aaagaggtgcagaaagtaaa-aacaggggtataattaacaaaactgtagtgaat 166  Q
    |||| ||||||||||||||| ||||| ||| | |||||||||||||||||||||    
T  28469032 aaaggggtgcagaaagtaaagaacagaggtgtgattaacaaaactgtagtgaat 28469085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 29550 - 29662
Alignment:
Q  263 gattaagatcggacagctttggttcaatcatgcagaggagcaacacagaccacaggatcaaagattcaaaggacaagggtgcgtgggtgtatggtaaggc 362  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||| ||||||||||| |  |||| |||||    
T  29550 gattaagatcagacagctttggttcaatcatgcagaggagcaacatagaccacaggatcaaaggatcaaaggaccagggtgcgtggatccatggcaaggc 29649  T
Q  363 cgtacacccacgc 375  Q
    |||||||||||||    
T  29650 cgtacacccacgc 29662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 17740167 - 17740278
Alignment:
Q  109 aagtgaaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaac----gggtcggt 204  Q
    |||||||||||||||||||||||||||||| ||||||||| | |||| ||||||||||||| ||| | |||||||||||||||||||     ||||||||    
T  17740167 aagtgaaagaggtgcagaaagtaaaaacagaggtataattgataaaaatgtagtgaattttaaaagaaaattgggcttaagcaaaaaaaaatgggtcggt 17740266  T
Q  205 tcgggttactgg 216  Q
    ||| ||||||||    
T  17740267 tcgagttactgg 17740278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 1887707 - 1887797
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaa--aacaattgggcttaagcaaaaacgggtcg 202  Q
    |||| ||||||||||| |||||||| ||| ||||||| |||||||||||||| ||  |||  ||||| |||||||||||| ||||||||||    
T  1887707 aaaggggtgcagaaagcaaaaacagaggtgtaattaataaaactgtagtgaaattaaaaaggaacaactgggcttaagcagaaacgggtcg 1887797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 1901808 - 1901898
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaa--aacaattgggcttaagcaaaaacgggtcg 202  Q
    |||| ||||||||||| |||||||| ||| ||||||| |||||||||||||| ||  |||  ||||| |||||||||||| ||||||||||    
T  1901808 aaaggggtgcagaaagcaaaaacagaggtgtaattaataaaactgtagtgaaattaaaaaggaacaactgggcttaagcagaaacgggtcg 1901898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 4662674 - 4662742
Alignment:
Q  116 agaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggct 185  Q
    |||| ||||||||||||||||||  || ||||||| ||||||||||||||  ||||||||||||||||||    
T  4662674 agagatgcagaaagtaaaaacagaagtgtaattaataaaactgtagtgaa-atttaaaaacaattgggct 4662742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 24186906 - 24186996
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaa--aacaattgggcttaagcaaaaacgggtcg 202  Q
    |||| ||||||||||| |||||||| ||| ||||||| | |||||||||||| ||  |||  ||||| |||||||||||| ||||||||||    
T  24186906 aaaggggtgcagaaagcaaaaacagaggtgtaattaatacaactgtagtgaaattaaaaaggaacaactgggcttaagcagaaacgggtcg 24186996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 12139 - 12052
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaacgggtcg 202  Q
    ||||||||||||||||||||||||||||||||||||| |||| || ||||||  || ||||||||||||||||||||| ||||||||||    
T  12139 aaagaggtgcagaaagtaaaaacaggggtataattaataaaattgcagtgaa-attaaaaaacaattgggcttaagcacaaacgggtcg 12052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 19207 - 19132
Alignment:
Q  109 aagtgaaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggct 185  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||    
T  19207 aagtgaaagaggtgcagaaagtaaaaacagaggtgtaattaacaaaactgtagtcaa-ttttaaaaacaattgggct 19132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 1890456 - 1890544
Alignment:
Q  114 aaagaggtgcagaaagtaaaaa-caggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaacgggtcg 202  Q
    |||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||  ||| |||||||||||||||| ||||||||||||||    
T  1890456 aaaggggtgcagaaagtaaaaaacagaggtgtaattaacaaaactgtagtgaa-atttgaaaacaattgggcttaggcaaaaacgggtcg 1890544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 10639778 - 10639707
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggct 185  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||  |||||||||||||||    
T  10639778 aaagaggtgcagaaagtaaaaacagaggtgtaattaataaaactgtagtgaaattaaaaaaacaattgggct 10639707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 1876341 - 1876429
Alignment:
Q  114 aaagaggtgcagaaagtaaaaa-caggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaacgggtcg 202  Q
    |||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||  ||| |||||||||||||||| ||||| ||||||||    
T  1876341 aaaggggtgcagaaagtaaaaaacagaggtgtaattaacaaaactgtagtgaa-atttgaaaacaattgggcttaggcaaacacgggtcg 1876429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 772573 - 772489
Alignment:
Q  119 ggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaa-aaacaattgggcttaagcaaaaacgggtcg 202  Q
    |||||||||||||||||||| ||| || |||| |||||||||||||| ||  ||  |||||||||||||||||||||||||||||    
T  772573 ggtgcagaaagtaaaaacagaggtgtatttaataaaactgtagtgaaattaaaaggaacaattgggcttaagcaaaaacgggtcg 772489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 52297292 - 52297241
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaa 165  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  52297292 aaagaggtgcagaaagtaaaaacagaggtataattaataaaactgtagtgaa 52297241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 12426115 - 12426171
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaa 74  Q
    ||||||||||  | |||||| | ||||||||||||||||||||||||||||||||||    
T  12426115 aaatatactatcacaataataaaaaaacagtaaataaacaattaacacaaagcaaaa 12426171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 20866600 - 20866676
Alignment:
Q  117 gaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggcttaagcaaaaa 195  Q
    |||||||||||||||||| ||| ||| |||||| | ||||||||||||||    |||||||||||||||||| ||||||    
T  20866600 gaggtgcagaaagtaaaa-cagaggtgtaattagcgaaactgtagtgaataaa-aaaaacaattgggcttaaacaaaaa 20866676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 21531127 - 21531180
Alignment:
Q  114 aaagaggtgcagaaagtaaa-aacaggggtataattaacaaaactgtagtgaat 166  Q
    |||| ||||||||||||||| ||||| ||| | |||||||||||||||||||||    
T  21531127 aaaggggtgcagaaagtaaagaacagaggtgtgattaacaaaactgtagtgaat 21531180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 64225 - 64295
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggct 185  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||  ||||||||||||||||||    
T  64225 aaagaggtgcagaaagtaaaaacagaggtgtaattaataaaactgtagtgaa-atttaaaaacaattgggct 64295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 39403 - 39474
Alignment:
Q  114 aaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaaacaattgggct 185  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||  |||||||||| ||||    
T  39403 aaagaggtgcagaaagtaaaaacagaggtgtaattaataaaactgtagtgaaattaaaaaaacaattaggct 39474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 9828 - 9754
Alignment:
Q  109 aagtgaaagaggtgcagaaagtaaaaa-caggggtataattaacaaaactgtagtgaatttttaaaaacaattggg 183  Q
    |||||||||||||||| |||||||||| |||  || |||||||||||||||||||||| ||| |||||||||||||    
T  9828 aagtgaaagaggtgcaaaaagtaaaaaacagatgtgtaattaacaaaactgtagtgaa-tttcaaaaacaattggg 9754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 9915 - 9859
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaa 74  Q
    |||||||||| |  |||||| | |||||||||||| |||||||||||||||| ||||    
T  9915 aaatatactatataaataataaaaaaacagtaaatgaacaattaacacaaagtaaaa 9859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 3860 - 3804
Alignment:
Q  18 aaatatactacaataataatgacaaaacagtaaataaacaattaacacaaagcaaaa 74  Q
    ||||||||||  | |||||| | ||||||||||||||||||||||||||||||||||    
T  3860 aaatatactatcacaataataaaaaaacagtaaataaacaattaacacaaagcaaaa 3804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 25008 - 24943
Alignment:
Q  109 aagtgaaagaggtgcagaaagtaaaaacaggggtataattaacaaaactgtagtgaatttttaaaa 174  Q
    ||||||| |||||||||||||||||||||| ||| |||  |  ||||| |||||||||||| ||||    
T  25008 aagtgaaggaggtgcagaaagtaaaaacagaggtgtaaaaagtaaaacagtagtgaattttaaaaa 24943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 20173 - 20206
Alignment:
Q  41 aaaacagtaaataaacaattaacacaaagcaaaa 74  Q
    |||||||||||| |||||||||||||||||||||    
T  20173 aaaacagtaaatgaacaattaacacaaagcaaaa 20206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University