View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9731_high_2 (Length: 773)
Name: NF9731_high_2
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_high_2 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
| [»] scaffold0127 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 370 - 756
Target Start/End: Complemental strand, 40647227 - 40646841
Alignment:
| Q |
370 |
ggtgccatttagggtgggttggagaaatattttcctaccatgggaaagatagattttgacctgcagctgccagttgaacaagttgcaattggctttgttt |
469 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40647227 |
ggtgccatttagggtgggtaggagaaagattttcctaccatgggaaagatagattttgacctgcagctgctagttgaacaagttgcaattggctttgttt |
40647128 |
T |
|
| Q |
470 |
ggtatggtagcttagacnnnnnnntcattaatggcttattatactaaactgtgaagtgtgaactacaccccccatttaaaaaacagtactatctatacca |
569 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
40647127 |
ggtatggtagcttagacaaaaaaatcattaatggcttattatactaaactgtgaagtgtgaactacaccccccatttaaaaaacagtgctatctacacca |
40647028 |
T |
|
| Q |
570 |
aaaaaccagtacttttctccacagacctcactcttctctcctccttgttcttcaaccacaacgagcaacatgaagagaagcttcaaaaaacatgaaagaa |
669 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40647027 |
aaaaaccagtacttttctccacagaccccactcttctctcctccttgttcttcaaccacaacgagcaacatgaagagaagcttcaaaaaacatgaaagaa |
40646928 |
T |
|
| Q |
670 |
aatctcacaccttcacttgtttcctgattgcttgttgaagagaggcttgcatctatcttcttaaacttcataaaatgaattcacaaa |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40646927 |
aatctcacaccttcacttgtttcctgattgcttgttgaagagaggcttgcatctatcttcttaaacttaataaaatgaattcacaaa |
40646841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 34492663 - 34492606
Alignment:
| Q |
93 |
tttgtggttttagccgttttgtcgattataccgcctttatctattggaatctcatctc |
150 |
Q |
| |
|
|||||||||||| | ||||||| ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
34492663 |
tttgtggttttaacagttttgtaagttataccacctttttctattggaatctcatctc |
34492606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 84040 - 83683
Alignment:
| Q |
13 |
caaagggagaagtaaaactgagtgggcttactttgtagcagttttctatatatgataatgcgggtatgagaacaccttgatttgtggttttagccgtttt |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
84040 |
caaagggagaagtaaaaccgagtgggcttactttgtagcagttttctatatatgataatgcgggtctgagaacaccttgatttgtggttttaaccgtttt |
83941 |
T |
|
| Q |
113 |
gtcgattataccgcctttatctattggaatctcatctcgttcggnnnnnnnntaa-taaagcaccttaaaagttagggaagtcaattggagttgtgatgg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
83940 |
gtcgattataccgcctttatctattggaatctcatctcgttcgaagaaaaaaaaaataaagcaccttaaaagttagggaagtcaattggagttgtgatgg |
83841 |
T |
|
| Q |
212 |
agataagacctaaggtgttgatggttcaattataaatttactgaagattgttgaagctttatcaaagaagatttaatggattttgtaagagaatttcata |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
83840 |
agataagacctaaggtgttgatggttcaattttaaatttagtaaagattgttgaagctttataaaagaagatttagtggattttgtaagagaatttcata |
83741 |
T |
|
| Q |
312 |
gtaattcaatgttgcctaaatcaagtcatctagaaaacagacctatttatatagtggg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
83740 |
gtaattcaatgttgcctaaatcaagtcatctagaaaacagacctatttatatagtggg |
83683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 369
Target Start/End: Original strand, 40882243 - 40882600
Alignment:
| Q |
13 |
caaagggagaagtaaaactgagtgggcttactttgtagcagttttctatatatgataatgcgggtatgagaacaccttgatttgtggttttagccgtttt |
112 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
40882243 |
caaagggagaagtaaaaccgagtgggcttactttgtagcagttttctatatatgataatgcgggtctgagaacaccttgatttgtggttttaaccgtttt |
40882342 |
T |
|
| Q |
113 |
gtcgattataccgcctttatctattggaatctcatctcgttcggnnnnnnnntaa-taaagcaccttaaaagttagggaagtcaattggagttgtgatgg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40882343 |
gtcgattataccgcctttatctattggaatctcatctcgttcgaagaaaaaaaaaataaagcaccttaaaagttagggaagtcaattggagttgtgatgg |
40882442 |
T |
|
| Q |
212 |
agataagacctaaggtgttgatggttcaattataaatttactgaagattgttgaagctttatcaaagaagatttaatggattttgtaagagaatttcata |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40882443 |
agataagacctaaggtgttgatggttcaattttaaatttagtaaagattgttgaagctttataaaagaagatttagtggattttgtaagagaatttcata |
40882542 |
T |
|
| Q |
312 |
gtaattcaatgttgcctaaatcaagtcatctagaaaacagacctatttatatagtggg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40882543 |
gtaattcaatgttgcctaaatcaagtcatctagaaaacagacctatttatatagtggg |
40882600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 4670446 - 4670512
Alignment:
| Q |
89 |
ttgatttgtggttttagccgttttgtcgattataccgcctttatctattggaatctcatctcgttcg |
155 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4670446 |
ttgatttgtggttttagccgttttattggttataccgcctttatatattggaatctcatctcgttcg |
4670512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 46767340 - 46767279
Alignment:
| Q |
89 |
ttgatttgtggttttagccgttttgtcgattataccgcctttatctattggaatctcatctc |
150 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
46767340 |
ttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctc |
46767279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 14602 - 14669
Alignment:
| Q |
88 |
cttgatttgtggttttagccgttttgtcgattataccgcctttatctattggaatctcatctcgttcg |
155 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||| |||| ||||||||||| ||||| |
|
|
| T |
14602 |
cttgatttgtggttttagccgttctgtcgattataccgtctttatttattagaatctcatcttgttcg |
14669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 417
Target Start/End: Original strand, 46580364 - 46580411
Alignment:
| Q |
370 |
ggtgccatttagggtgggttggagaaatattttcctaccatgggaaag |
417 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||||||||||||| |||| |
|
|
| T |
46580364 |
ggtggcatttagggtgggtaggagaaagattttcctaccatggaaaag |
46580411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 51492500 - 51492458
Alignment:
| Q |
375 |
catttagggtgggttggagaaatattttcctaccatgggaaag |
417 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
51492500 |
catttagggtgggatggagaaagattttcccaccatgggaaag |
51492458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 51610269 - 51610222
Alignment:
| Q |
370 |
ggtgccatttagggtgggttggagaaatattttcctaccatgggaaag |
417 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||||| |||||||||||| |
|
|
| T |
51610269 |
ggtggcatttagggtgggtaggaggaatattttcccaccatgggaaag |
51610222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University