View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_1 (Length: 810)
Name: NF9731_low_1
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_1 |
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| [»] scaffold0330 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 11 - 618
Target Start/End: Complemental strand, 20177465 - 20176856
Alignment:
| Q |
11 |
caaaggtaaaaaccatggagtgtgtttggataagatatccaacactgtctcgttgtaattccatcataatcatatggaacaaattgtctttttgaaataa |
110 |
Q |
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| T |
20177465 |
caaaggtaaaaaccatggagtgtctttggataagatgtccaagactgtctcgttgtagttccatcataatcatatgaaa-aaattgtctttttgaaataa |
20177367 |
T |
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| Q |
111 |
agttaataatttattcaacatgcttaattacaaacgaacgagacatttactaccggtaattcattattattgacggctaagnnnnnnnnnnnnnnn---c |
207 |
Q |
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| T |
20177366 |
agttaataatttatacaacatacttaattacaaaagaacgagacatttaccaccggtaattcattattattgacggctaagttttcttgttttttttttc |
20177267 |
T |
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| Q |
208 |
tttatataaaagacgacaaatattattgatgatatttgtccattaggatattagttacaatacaagtgggagtatcattgagccaaattttattgggctc |
307 |
Q |
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| T |
20177266 |
tttatataaaagacgacaaatattattgatgatatttgtccataaggacattagttacaatataagtgggggtatcattgagccaaattttattgggctc |
20177167 |
T |
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| Q |
308 |
gagtaaagcttgttgggctaatctatgggctgcactattgccttttctacccacatgcttgtaagaaacatgtctgaagctatttcttctgatttttata |
407 |
Q |
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| T |
20177166 |
gagtaaggcttgttgggctaatctatgggttgtactattatcttttctacccacatgcttgtaagaaacatgtctgaagctatttcttctgatttttata |
20177067 |
T |
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| Q |
408 |
ccacttatgatattaccaacgtatgtgtttggcttttcatcttttcgagataagattcggataatttgctcatcatctgattcgagctccaattcatgga |
507 |
Q |
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| T |
20177066 |
ccacttatgatattaccaacgtatgtgtttggcttttcatcttttccagataagatccggataatttgctcattatctgattcgagctccaattcatgga |
20176967 |
T |
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| Q |
508 |
atcccttcttatccgcaagctccatggccaaatagattgcaaaagcttcagccgctgcagaattgtgagttccagggaggcaccaagtggccgctgctaa |
607 |
Q |
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| T |
20176966 |
atcccttcttatctgcaagctccatggccaaatagattgcaaaagcttcaaccgctgcagaattgtgagttccagggaggcaccaaatggccgttgctaa |
20176867 |
T |
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| Q |
608 |
gacatcaccaa |
618 |
Q |
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| T |
20176866 |
gacatctccaa |
20176856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 666 - 725
Target Start/End: Original strand, 9302 - 9363
Alignment:
| Q |
666 |
ttcatgatcatctttaatatacaatcagagt--aaataattttctttcaaaagctttttaca |
725 |
Q |
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| T |
9302 |
ttcatgatcgtctttaatataaaatcagagtaaaaataattttctttcgaaagtcttttaca |
9363 |
T |
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