View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_10 (Length: 455)
Name: NF9731_low_10
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 5774752 - 5775187
Alignment:
| Q |
1 |
tgatggccctgtagacattctccgagttcatgcgtttggtgtaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774752 |
tgatggccctgtagacattctccgagttcatgcgtttggtgtaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctg |
5774851 |
T |
|
| Q |
101 |
gtcagagggattgtcctttttcgccttgttgatgacaaggtcttctctcttcatgtgctccccatatttctccttgaactcttctttcgacatgttaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774852 |
gtcagagggattgtcctttttcgccttgttgatgacaaggtcttctctattcatgtgctccccatatttctccttgaactcttctttcgacatgttaacc |
5774951 |
T |
|
| Q |
201 |
tcaaaatctcctacgaggtaattcctatccctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacacatgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774952 |
tcaaaatctcctacgaggtaattcctatccctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacacatgaa |
5775051 |
T |
|
| Q |
301 |
aaacttccaaatgaaatttggaggcgatttcagagaagtcccgtgccgctttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcgga |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5775052 |
aaacttccaaatgaaatttggaggcgatttcagagaagtcccgtgccgctttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcgga |
5775151 |
T |
|
| Q |
401 |
ggacatacgattggtgtaagtccttaaggtgtggac |
436 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
5775152 |
ggacatacgattggtgtaagtccttaaggtgtggac |
5775187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 5768472 - 5768766
Alignment:
| Q |
1 |
tgatggccctgtagacattctccgagttcatgcgtttggtgtaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctg |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768472 |
tgatggctctgtagacattctcggagttcatacgtttggtgcaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctg |
5768571 |
T |
|
| Q |
101 |
gtcagagggattgtcctttttcgccttgttgatgacaaggtcttctctcttcatgtgctccccatatttctccttgaactcttctttcgacatgttaacc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768572 |
gtcagagggattgtcctttttcgccttgttgatgacaaggtcttctctattcatgtgctccccatatttctccttgaactcttctttcgacatgttaacc |
5768671 |
T |
|
| Q |
201 |
tcaaaatctcctacgaggtaattcctatccctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacac |
295 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5768672 |
tcaaaatctcctacgaggtaattcctatctctaagcatctccatcaccgtcttccggatcctatacagcttagatatttcatcctccgaaaacac |
5768766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 5775128 - 5775421
Alignment:
| Q |
2 |
gatggccctgtagacattctccgagttcatgcgtttggtgtaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctgg |
101 |
Q |
| |
|
|||||| ||||||||||| || ||| ||| || |||||||||||||| |||||||||||| ||||||| |||| ||| || ||||| |||||||||||| |
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| T |
5775128 |
gatggctctgtagacattgtcggaggacatacgattggtgtaagtccttaaggtgtggacgtcaaccttatcattctcaggaaagaacacataaatctgg |
5775227 |
T |
|
| Q |
102 |
tcagagggattgtcctttttcgccttgttgatgacaaggtcttctctcttcatgtgctccccatatttctccttgaactcttctttcgacatgttaacct |
201 |
Q |
| |
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|||||||||||||| ||||| || || ||||||||||||||||||||||||| || ||| |||||| ||||||||||||||| ||| ||||| ||||| |
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| T |
5775228 |
tcagagggattgtcttttttggctttcttgatgacaaggtcttctctcttcaagttctcaccatatgtctccttgaactcttgttttgacatacaaacct |
5775327 |
T |
|
| Q |
202 |
caaaatctcctacgaggtaattcctatccctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacac |
295 |
Q |
| |
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| ||||||||||||||||||||||| || | |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5775328 |
cgaaatctcctacgaggtaattcctgtcgcgaagcatctccatcaccttcttccggatcctatacagctttgatatttcatcctccgaaaacac |
5775421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 297 - 436
Target Start/End: Original strand, 5768399 - 5768532
Alignment:
| Q |
297 |
tgaaaaacttccaaatgaaatttggaggcgatttcagagaagtcccgtgccgctttagtaaggctggtctggcaaacgacgatggctctgtagacattgt |
396 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
5768399 |
tgaaaaacttccaaatgaaatttggagtcgatttcagaga------gtgccatgttagtaaggctggtctggcaaacgatgatggctctgtagacattct |
5768492 |
T |
|
| Q |
397 |
cggaggacatacgattggtgtaagtccttaaggtgtggac |
436 |
Q |
| |
|
||||| |||||| |||||| ||||||| ||||||||||| |
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|
| T |
5768493 |
cggagttcatacgtttggtgcaagtcctgaaggtgtggac |
5768532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 436
Target Start/End: Original strand, 5774670 - 5774812
Alignment:
| Q |
297 |
tgaaaaacttccaaatgaaatttggaggcgatttcagagaa---gtcccgtgccgctttagtaaggctggtctggcaaacgacgatggctctgtagacat |
393 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | ||||| || || |||| ||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
5774670 |
tgaaaaacttccaaatgaaatttggagtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgatgatggccctgtagacat |
5774769 |
T |
|
| Q |
394 |
tgtcggaggacatacgattggtgtaagtccttaaggtgtggac |
436 |
Q |
| |
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| || ||| ||| || |||||||||||||| ||||||||||| |
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| T |
5774770 |
tctccgagttcatgcgtttggtgtaagtcctgaaggtgtggac |
5774812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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