View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_11 (Length: 449)
Name: NF9731_low_11
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 1373335 - 1372911
Alignment:
| Q |
1 |
gttaactgtagtcacagctgaagacgacatcatagaggaagccatgtttttctcccttagttcactagtaagatagtaagatatacttctgcttgaattg |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1373335 |
gttaactgtagtcacagctgaagaggacatcatagaggaagccatgtttttctcccttagttcactagtaagata--------tacttctgcttgaattg |
1373244 |
T |
|
| Q |
101 |
caaaacctgtactcaaacttatatatatactatttttaattttctatttccaatattatggtcttataaattgtggtaatgcttcataataccattttgt |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373243 |
caaaacctatactcaaacttatatatatactatttttaattttctatttccaatattatggtcttataaattgtggtaatgcttcataataccattttgt |
1373144 |
T |
|
| Q |
201 |
tggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcattagccaccaatatgaaattgccacgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373143 |
tggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcattagccaccaatatgaaattgccacgt |
1373044 |
T |
|
| Q |
301 |
gtagttttgcgactattaatgcctccacaaatatcaatcatgtatggtacttttttcaggctctggctccttactggggcaatcaatattagccattact |
400 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373043 |
gtagttttgtgactattaatgcctccacaaatatcaatcatgtatggtacttttttcaggctctggctccttactggggcaatcaatattagccattact |
1372944 |
T |
|
| Q |
401 |
ttttccaccctatttggttcttgagcgccctat |
433 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
1372943 |
ttttccaccctatttggttcttgagcgccctat |
1372911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 1383611 - 1383248
Alignment:
| Q |
1 |
gttaactgtagtcacagctgaagacgacatcatagaggaagccatgtttttctcccttagttcactagtaagatagtaagatatacttctgcttgaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |
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| T |
1383611 |
gttaactgtagtcacagctgaagaggacatcatagaggaagccatgtttttctcccttacttt----gttcactagtaagatatacttctgcttgaattg |
1383516 |
T |
|
| Q |
101 |
caaaacctgtactcaaactta-tatatatactatttttaattttctatttccaatattatggtcttataaattgtggtaatgcttcataataccattttg |
199 |
Q |
| |
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|||| ||| ||||||||||| | |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1383515 |
caaagcctatactcaaacttgctttatataatgtttttatttttctatttccaatattatggtcttataaattgtggtaatgcttcataataccattttg |
1383416 |
T |
|
| Q |
200 |
ttggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcattagccaccaatatgaaattgccacg |
299 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1383415 |
t-------gaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcattagccaccaatatgaaattgccacg |
1383323 |
T |
|
| Q |
300 |
tgtagttttgcgactattaatgcctccacaaatatcaatcatgtatggtacttttttcaggctctggctccttac |
374 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
1383322 |
tgtagttttgtgactattaatgcctccacaaatatcaatcatctatggtacttttttcaggcattggctccttac |
1383248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 1389716 - 1389353
Alignment:
| Q |
1 |
gttaactgtagtcacagctgaagacgacatcatagaggaagccatgtttttctcccttagttcactagtaagatagtaagatatacttctgcttgaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |
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|
| T |
1389716 |
gttaactgtagtcacagctgaagaggacatcatagaggaagccatgtttttctcccttacttt----gttcactagtaagatatacttctgcttgaattg |
1389621 |
T |
|
| Q |
101 |
caaaacctgtactcaaactta-tatatatactatttttaattttctatttccaatattatggtcttataaattgtggtaatgcttcataataccattttg |
199 |
Q |
| |
|
|||| ||| ||||||||||| | |||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1389620 |
caaagcctatactcaaacttgctttatataatgtttttatttttctatttccaatattatggtcttataaattgtggtaatgcttcataataccattttg |
1389521 |
T |
|
| Q |
200 |
ttggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcattagccaccaatatgaaattgccacg |
299 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1389520 |
t-------gaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcattagccaccaatatgaaattgccacg |
1389428 |
T |
|
| Q |
300 |
tgtagttttgcgactattaatgcctccacaaatatcaatcatgtatggtacttttttcaggctctggctccttac |
374 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
1389427 |
tgtagttttgtgactattaatgcctccacaaatatcaatcatctatggtacttttttcaggcattggctccttac |
1389353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 1357992 - 1357650
Alignment:
| Q |
1 |
gttaactgtagtcacagctgaagacgacatcatagaggaagcca-tgtttttctcc----cttagttcactagtaagatagtaagatatacttctgcttg |
95 |
Q |
| |
|
|||||||||||||| ||||||||| || |||||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
1357992 |
gttaactgtagtcatagctgaagaggaaatcatagaggaagccattttttttctcccttacttagttcactagtaa---tgtaagatatacttctgcttg |
1357896 |
T |
|
| Q |
96 |
aattgcaaaacctgtactcaaactt-atatatatactatttttaattttctatttccaatattatggtcttataaattgtggtaa-----tgcttcataa |
189 |
Q |
| |
|
|||| |||| ||| ||||||||||| |||||||| | | |||| |||| |||||||||||||||||| || |||||||||||| |||| ||||| |
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|
| T |
1357895 |
aatttcaaagcctatactcaaacttgctatatataatgtctttatttttgtatttccaatattatggttctaaaaattgtggtaactggttgctgcataa |
1357796 |
T |
|
| Q |
190 |
taccattttg-ttggttgtgaatatgataaactttgctgccatatcaaccac---acaggaatggaaatttttgtgctagccttatcattagccaccaat |
285 |
Q |
| |
|
||| |||||| ||| ||||||| ||||||||| |||| ||| || |||||| ||| || |||||||||||||| | |||||||| |||||||||||| |
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| T |
1357795 |
tacaattttgtttgattgtgaaaatgataaacattgcagcc--attaaccacacaacaagattggaaatttttgtggt-gccttatctttagccaccaat |
1357699 |
T |
|
| Q |
286 |
atgaaattgccacgtgtagttttgcgactattaatgcctccacaaatat |
334 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||| |||| |||||| |
|
|
| T |
1357698 |
atgaaattgccacgtgtagttgtgtgactattaatgcttccataaatat |
1357650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 1350037 - 1349767
Alignment:
| Q |
1 |
gttaactgtagtcacagctgaagacgacatcatagaggaagccatgtttttctcccttagttcactagtaagatagtaagatatacttctgcttgaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| ||||| | | |||||| ||||||||| |
|
|
| T |
1350037 |
gttaactgtagtcacagctgaagaggacatcatagaggaagccattttttt----cttagttcac--------aagtaaaacacacttctacttgaattg |
1349950 |
T |
|
| Q |
101 |
caaaacctgtactcaaactt-atatatatact-atttttaattttctatttccaatattatggtcttataaattgtggtaa-----tgcttcataatacc |
193 |
Q |
| |
|
|||| | | |||| |||||| |||||||| | |||||| ||||||||||||||||||||||||||| | |||||||||| | || | ||||||| |
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|
| T |
1349949 |
caaagcttctactaaaacttgctatatataatggtttttatttttctatttccaatattatggtctta-atattgtggtaattggctactgcctaatacc |
1349851 |
T |
|
| Q |
194 |
attttgtt-ggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagccttatcatta |
276 |
Q |
| |
|
| ||||| | || |||| ||||||| | ||| | |||| ||||||||| |||||||||||| |||| |||||||||||||| |
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|
| T |
1349850 |
aacttgttagattttgaaaatgataatcattgaacctatattaaccacacaagaatggaaatttgtgtgttagccttatcatta |
1349767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1393648 - 1393604
Alignment:
| Q |
1 |
gttaactgtagtcacagctgaagacgacatcatagaggaagccat |
45 |
Q |
| |
|
|||||||||||| | ||||||||| || ||||||||||||||||| |
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|
| T |
1393648 |
gttaactgtagtgatagctgaagaggagatcatagaggaagccat |
1393604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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