View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_12 (Length: 437)
Name: NF9731_low_12
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 29624114 - 29623703
Alignment:
| Q |
17 |
cagaagatcctccgtctttcttctctttctttagttccttggaagtgtctgcaataatttcaacagggccagccgctatgaggcgatccatgcctgata- |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29624114 |
cagaagatcctccgtctttcttctctttctttagttccttggaagtgtctgcaataatttcaacagggccagccgctatgaggcgatccatgcctgatat |
29624015 |
T |
|
| Q |
116 |
---ctttcaaatttgtttccatatttatcacgaaaggaaacataacatgttgtctttttgcgacaacgatgaccatcttcatcacgagacataatttaga |
212 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
29624014 |
atactttcaaatttgtttccatattgatcacgaaaggaaacataacatgttgtctttttgctacaacgatgaccatcttcatcacgagacataatgtaga |
29623915 |
T |
|
| Q |
213 |
tatagaagtcatataagatacttccatgcgcttgtaagaaccatattgatcacggatgacaacatctgatgcagaaccagtcgcagaaattatactaaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29623914 |
tatagaagtcatataagatacttccatgcgcttgtaagaaccatattgatcacggatgacaacatctgatgcagaaccagtcgcagaaattatactaaca |
29623815 |
T |
|
| Q |
313 |
aatcgatgatgatcatatgcctcagatagtttgtataaagcgtccaaaacatcctggccagatttcagattaatggtatgcagcttgcctggtaggcttc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29623814 |
aatcgatgatgatcatatgcctcagatagtttgtataaagcgtccaaaacatcctggccagatttcagattaatggtatgcagcttgcctggtaggcttc |
29623715 |
T |
|
| Q |
413 |
aatttctcttct |
424 |
Q |
| |
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|||||||||||| |
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| T |
29623714 |
aatttctcttct |
29623703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 34 - 389
Target Start/End: Complemental strand, 21445596 - 21445241
Alignment:
| Q |
34 |
ttcttctctttctttagttccttggaagtgtctgcaataatttcaacagggccagccgctatgaggcgatccatgcctgatactttcaaatttgtttcca |
133 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||| ||| || || |||||||||||| ||||| | || ||||||||| || |||| |
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| T |
21445596 |
ttcttctctttcttcagttccttggaagtgtccgcaataatttcaataggaccggctgctatgaggcgacccatgtc-gacactttcaaaatttaatcca |
21445498 |
T |
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| Q |
134 |
tatttatcacgaaaggaaacataacatgttgtctttttgcgacaacgatgaccatcttcatc-acgagacataatttagatatagaagtcatataagata |
232 |
Q |
| |
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|||| ||| | |||||||||| ||||||||| ||||| ||||| |||||||||||||||| || |||| | || | ||| |||||||| ||||||| |
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| T |
21445497 |
tattcatcgcaaaaggaaacagaacatgttgccttttccggacaatgatgaccatcttcatcaaccagacgtgatacatataacgaagtcatgtaagata |
21445398 |
T |
|
| Q |
233 |
cttccatgcgcttgtaagaaccatattgatcacggatgacaacatctgatgcagaaccagtcgcagaaattatactaacaaatcgatgatgatcatatgc |
332 |
Q |
| |
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||| || || |||| || |||||||||||||||| | ||||| |||||| | |||| |||||||||||||| || | | ||||| |||||||||||| |
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| T |
21445397 |
ctttcaagcccttgaaataaccatattgatcacgaaagacaatgtctgatataaaaccggtcgcagaaattatgcttagatatcgacgatgatcatatgt |
21445298 |
T |
|
| Q |
333 |
ctcagatagtttgtataaagcgtccaaaacatcctggccagatttcagattaatggt |
389 |
Q |
| |
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|| |||||||| ||||| |||||||| |||||||| ||||| ||||| ||||||||| |
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| T |
21445297 |
cttagatagttggtatatagcgtccacaacatcctcgccagctttcaaattaatggt |
21445241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 236 - 367
Target Start/End: Complemental strand, 35890724 - 35890593
Alignment:
| Q |
236 |
ccatgcgcttgtaagaaccatattgatcacggatgacaacatctgatgcagaaccagtcgcagaaattatactaacaaatcgatgatgatcatatgcctc |
335 |
Q |
| |
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|||||| ||||||||||||||||||||||| | ||||| ||||| ||||||| |||||||||||||| ||||||||| || |||||||||||| | | |
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| T |
35890724 |
ccatgctcttgtaagaaccatattgatcacaaaagacaatgcctgatacagaaccggtcgcagaaattatcctaacaaattgacgatgatcatatgtcgc |
35890625 |
T |
|
| Q |
336 |
agatagtttgtataaagcgtccaaaacatcct |
367 |
Q |
| |
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|||||||| ||||| ||| |||| ||||||| |
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| T |
35890624 |
agatagttggtatatagcatccactacatcct |
35890593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 367
Target Start/End: Original strand, 35528261 - 35528379
Alignment:
| Q |
249 |
agaaccatattgatcacggatgacaacatctgatgcagaaccagtcgcagaaattatactaacaaatcgatgatgatcatatgcctcagatagtttgtat |
348 |
Q |
| |
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|||||||| ||||||| | | || ||| |||||| || |||||| | ||||| ||||||||||| |||||||||| | |||||||||||||| |||| |
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| T |
35528261 |
agaaccatcttgatcatgaaagagaacgtctgatacataaccagacacagaatctatactaacaaggcgatgatgatgaaatgcctcagatagtcggtat |
35528360 |
T |
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| Q |
349 |
aaagcgtccaaaacatcct |
367 |
Q |
| |
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| ||| |||| ||||||| |
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| T |
35528361 |
agagcatccaccacatcct |
35528379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 34989969 - 34989913
Alignment:
| Q |
287 |
aaccagtcgcagaaattatactaacaaatcgatgatgatcatatgcctcagatagtt |
343 |
Q |
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||||||||||| ||| ||| |||||| ||| |||||||||||||||||||||||| |
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| T |
34989969 |
aaccagtcgcaaaaactatgctaacatgacgacgatgatcatatgcctcagatagtt |
34989913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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