View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_13 (Length: 435)
Name: NF9731_low_13
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 6060459 - 6060880
Alignment:
| Q |
1 |
cctgccatacacacgtgatccgtcttggagagatgttgatggagttttatatgacaaattctccactacaatctctttgagttcaagactgtctttgagt |
100 |
Q |
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| T |
6060459 |
cctgccatacacacgagattcgtcttggagagatgttgatggagttttatatgacaaattctccactacaatctctttgagttcaagactgtctttgagt |
6060558 |
T |
|
| Q |
101 |
ttcaagatatattctagtctctcaactatatcttcaaacatactaaccataaccctatcttgcacattgaaaaagcgcgaaaagagattagttacctctt |
200 |
Q |
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| T |
6060559 |
ttcaaaatatattctagtctctcaactatatcttcaaacttactaaccatacccctatcttgcacattgaaaaagcgcgaaaagagattagttacctctt |
6060658 |
T |
|
| Q |
201 |
tttgaatcacagtttttgtcgaaacttcatccaataagtcaacagctacatatacagcatctttgagatcattgagccaattgttgacatcagaatccct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6060659 |
tttgaatcacagtttttgtcgaaacttcatccaataagtcatcagctacatagacagcatctttgagatcattgagccagttgttgacatcagaatccct |
6060758 |
T |
|
| Q |
301 |
ggtttgtttcttctcagcatcattaagcacagctctaaccactctcaaagttgtctcgagcctctgaagcaatttcttgtcaagtttgtttccaaggatc |
400 |
Q |
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| T |
6060759 |
ggtttgtttcttctcagcatcattaagcacagctctaaccactctcaaagttgtctcgagcctctgaagcaatttcttgtcaagtttgtttccaaggatc |
6060858 |
T |
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| Q |
401 |
aaattagcaacttctggtgatg |
422 |
Q |
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| T |
6060859 |
aaattagcaacttcaggtgatg |
6060880 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 41932641 - 41932576
Alignment:
| Q |
229 |
atccaataagtcaacagctacatatacagcatctttgagatcattgagccaattgttgacatcaga |
294 |
Q |
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|||||| | |||| |||| ||||| ||||||||||||||||||| |||||| ||||| ||| |||| |
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| T |
41932641 |
atccaaaatgtcatcagcaacatagacagcatctttgagatcatcgagccatttgttaacagcaga |
41932576 |
T |
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