View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_15 (Length: 421)
Name: NF9731_low_15
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 5 - 404
Target Start/End: Complemental strand, 45318941 - 45318542
Alignment:
| Q |
5 |
ctttctttcattattgttattttcaatttttcggtataaaaatataaataccaaaattatcgtaagttaaaagcaaagcatttcctagattgtaattaga |
104 |
Q |
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| T |
45318941 |
ctttctttcattattgttattttcaatttttcggtataaaaatataaataccaaaattatcgtaagttaaaagcaaagcatttcctagattgtaattaga |
45318842 |
T |
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| Q |
105 |
caacaattatttactatgtaacaatattgaatgaacttacagcgatataaaagtcgtcgataagaagaccatagaagaaccacacaatagcatttaaggt |
204 |
Q |
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| T |
45318841 |
caacaattatttactatgtaacaatattgaatgaacttacagcgatataaaagtcgtcgataagaagaccatagaagaaccacacaatagcatttaaggt |
45318742 |
T |
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| Q |
205 |
caaaaagaaagacaaatttagcggcatgaatgccacacttttcgtctttattacctgtttctacaagtagagatgaaacatggaattaaactttagcatc |
304 |
Q |
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| T |
45318741 |
caaaaagaaagacaaatttagcggcatgaatgctacacttttcgtctttattacctgtttctacaagtagagatgaaacatggaattaaactttagcata |
45318642 |
T |
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| Q |
305 |
aaatctagaaggcatagttataaaataaaatgatgatgacataatctacttaagaatatataaatctttacatatataattgttttgaaaattaagaaat |
404 |
Q |
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| T |
45318641 |
aaatctagaaggcataattataaaataaaatgatgatgacataatctacttaagaatatataaatctttacatatataattgttttgaaaattaagaaat |
45318542 |
T |
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