View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_16 (Length: 415)
Name: NF9731_low_16
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 9656525 - 9656140
Alignment:
| Q |
17 |
acatcaagtttcagtgaaatacggatcaatgtttttaaaaccggaccggagacaggttgaaccatagtttaatcggatgactgataacaaataagttctt |
116 |
Q |
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| T |
9656525 |
acataaagtttcagtgaaatacggatcaatgtttttaaaaccggaccggagacaggttgaaccatagttgaatcggatgactgataacaaataagttctt |
9656426 |
T |
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| Q |
117 |
aaaaagnnnnnnnn---gggaaaaatgaatgaccattagcggttcaaatcagttcgagcaattataagttgaaccaactgacagaatgaccagttcaagg |
213 |
Q |
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| T |
9656425 |
aaaaagtttttttttttgggaaaaatgaacgaccattagcggttcaaatcagttcgagcaattataagttgaaccaactgacagaatgaccagttcaagg |
9656326 |
T |
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| Q |
214 |
ttcaaccaattgcactgttcagttagttttgaaaacactgatacgaatgatgtggccacaaagtagttgcggacacattagaaatcttgacaccacgatc |
313 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9656325 |
ttcaaccaattgcactgttccgttagttttgaaaacactgatacgaatgatgtggccgcaaagtggttgcggacacattagaaatcttgacaccacgatc |
9656226 |
T |
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| Q |
314 |
atagttgcaggccgtgnnnnnnncaaacccttaaagtaggtttgaactttctaatagtgtttaactttgatctaacaggtgaaaaat |
400 |
Q |
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| T |
9656225 |
atagttgcagg-cgtgtttttttcaaacctttaaagtaggtttgaactttctaatagcgtttaactttgatctaacaggtgaaaaat |
9656140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 358 - 400
Target Start/End: Complemental strand, 9615513 - 9615471
Alignment:
| Q |
358 |
aactttctaatagtgtttaactttgatctaacaggtgaaaaat |
400 |
Q |
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| T |
9615513 |
aactttctaatagtgttttactttgatctaacaggtgaaaaat |
9615471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 400
Target Start/End: Complemental strand, 9640113 - 9640071
Alignment:
| Q |
358 |
aactttctaatagtgtttaactttgatctaacaggtgaaaaat |
400 |
Q |
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|||| ||||||||||||| |||||||| ||||||||||||||| |
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| T |
9640113 |
aactgtctaatagtgttttactttgatttaacaggtgaaaaat |
9640071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 400
Target Start/End: Complemental strand, 9650165 - 9650123
Alignment:
| Q |
358 |
aactttctaatagtgtttaactttgatctaacaggtgaaaaat |
400 |
Q |
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| T |
9650165 |
aactgtctaatagtgttttactttgatttaacaggtgaaaaat |
9650123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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