View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_17 (Length: 408)
Name: NF9731_low_17
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 25702486 - 25702086
Alignment:
| Q |
1 |
tttattttctcatatttttattgatatcgatgtgttaacgtgtgtccatgattgtgtttgtatatatgtaggtgtttcacgtatcataagnnnnnnnnng |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25702486 |
tttattttctcatatttttattgatatcgatttgttaacgtgtgtccatgattgtgtttgtatatatgtaggtgtttcacgtatcataagtttttttttg |
25702387 |
T |
|
| Q |
101 |
cttcattggcctattgacacatactcaaataaacacacacgaggaagtgtggagacttgggattccacataaaacgtcttccaactccaagtcaaagttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25702386 |
cttcattggcctattgacacatactcaaataaacacacacgaggaagtgtggagacttgggattccacataaaacgtcttccaactccaagtcaaagttc |
25702287 |
T |
|
| Q |
201 |
taaaaaacattatgttaacgtcaaaatagctgcaaaattggttttaattcgtttccgttttaac------aacaaaacaacggcgacaaaaagttgttac |
294 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25702286 |
ta-aaaacattatgttaacgtcaaaatagctgcaaaattggttataatttgtttccgttttaacagagtaaacaaaacaacggcgacaaaaagttgttac |
25702188 |
T |
|
| Q |
295 |
acaccgaaatgcccttccacctatgacaaaatgcgtttcctaaacaaaaagagcaagaatttatggataaaataaattttttactaaccttatctctctc |
394 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25702187 |
acaccgaaatgcccttccgcctatgacaaaatgcgtttcctaaacaaaaagagcaagaatttatggataaaataaattttttactaaccttatctctctc |
25702088 |
T |
|
| Q |
395 |
tg |
396 |
Q |
| |
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|| |
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|
| T |
25702087 |
tg |
25702086 |
T |
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