View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_19 (Length: 394)
Name: NF9731_low_19
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 23820531 - 23820903
Alignment:
| Q |
1 |
tgtacatgatgacattgcacattgcaaatacaatatccttgaaagttaacaaaagtgaatgtctccacatgaggtcattccatgccataaacatttgtta |
100 |
Q |
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| T |
23820531 |
tgtacatgatgacattgcacattgcaaatacactatccttgaaaattaacaaaagtgaatgtctccacatgaggtcattccatgccataaacatttgtta |
23820630 |
T |
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| Q |
101 |
ctcaatagagtgtacatatcttactatagctaatgtttgagaactaaacttctcttggaaattctgcttgttgagagtgcttatgtctatgaatagttgg |
200 |
Q |
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| T |
23820631 |
ctcaatagattgtacatatcttactatagctaatgtttgagaactaaacttctcttggaaattctgtttgatgagagtgcctaagtctatgaatagttgg |
23820730 |
T |
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| Q |
201 |
annnnnnnggtatttgtaaattgtaacagctaaataactgcattgctagtgcttttgtatgtttatcttgctagctcagttttgttatggtgtttcctaa |
300 |
Q |
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| T |
23820731 |
aattttttggtatttgtaaattgtaacagctaaataactgcattgctagtgcttttgtatgtttatcttgctagctcagttttgttatgctgtttcctaa |
23820830 |
T |
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| Q |
301 |
tacaatatacaataatgatagataagcacactttannnnnnnacactcagtcaacgtcccattttctctctat |
373 |
Q |
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| T |
23820831 |
tacaatatacaacaatgatagataaacatactttatttttctacgctcattcaacatctcattttctctctat |
23820903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 23829700 - 23829894
Alignment:
| Q |
9 |
atgacattgcacattgcaaatacaatatccttgaaagttaacaaaagtgaatgtctccacatgaggtcattccatgccataaacatttgt--tactcaat |
106 |
Q |
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| T |
23829700 |
atgacactgcacactgcaaatacactatccttggaagttgacaaaactgaatgtccccacatgaggtgattccacgtcgtaaacatttgtgttacttaat |
23829799 |
T |
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| Q |
107 |
agagtgtacatatcttactatagctaatgtttgagaactaaacttctcttggaaattctgcttgttgagagtgcttatgtctatgaatagttgga |
201 |
Q |
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| T |
23829800 |
aaattgtagatatcttactatagttaatgtatgagaactaaatttttcttggacattctgcttgttgatagtgcatatgtcaaagaataattgga |
23829894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 23833658 - 23833716
Alignment:
| Q |
118 |
atcttactatagctaatgtttgagaactaaacttctcttggaaattctgcttgttgaga |
176 |
Q |
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| T |
23833658 |
atcttaatatagctaatgtttcagaaccaaacttctcttggacattctgcttgttgaga |
23833716 |
T |
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