View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_20 (Length: 381)
Name: NF9731_low_20
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 381
Target Start/End: Original strand, 7477930 - 7478305
Alignment:
| Q |
11 |
cagagagggacgtatgaaagaagatgttnnnnnnnnntaattgttttcgtgaatttaactaagttcataaagacattatataatatacatataatttagg |
110 |
Q |
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| T |
7477930 |
cagagagggacgtatgatagaagatgtttaaaaaaaaaaattgttttcgtgagtttaactaagttcgtaaagacattatataatatacatataatttagg |
7478029 |
T |
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| Q |
111 |
gttcaaacttcaaacacctcatttannnnnnnn-aaaagatgaatttttgtaactaaactttaaaaaatacatatgtatttatttgtttctcacacccat |
209 |
Q |
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| T |
7478030 |
gttcaaacttcaaacacctccttcatttttttttaaaagatgaatttttgtaactaaactttaaaaaatacatatgtatttatttgtttctcacacccat |
7478129 |
T |
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| Q |
210 |
ttacgaaaagtaatttttt---aatgtgtcagatattaaatgtatctcgctaaataataagaattgaaaatgtagttcaccatattgtggaaatctgact |
306 |
Q |
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||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7478130 |
ttacgaaaagtaatttttttgaactgtgtcagatattaaatatatctcgctaaataataagaattgaaaatgtagttcaccgtattgtggaaatctgact |
7478229 |
T |
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| Q |
307 |
ttcctta-gggtagacataaccctcaannnnnnnnctttattttagtcacgtctttcgtgttaattatatacattc |
381 |
Q |
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| T |
7478230 |
ttccttaggggtagacacaaccctcaattttttttctttattttagtcacgtctttcgtgttaattatatacattc |
7478305 |
T |
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