View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_23 (Length: 367)
Name: NF9731_low_23
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 737848 - 738198
Alignment:
| Q |
1 |
aaaagaccgtctgtcacagtgtttatcggttagttcgactatgtacaggatactttaactattcaaaatcagttgaatgaatttagtttgaactttacaa |
100 |
Q |
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| T |
737848 |
aaaagaccgtctgtcacagtgtttatcggttagttcgactatgtacaggatactttaactattcaaaatcagttgaatga-tttagtttgaactttacaa |
737946 |
T |
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| Q |
101 |
aatatagcagaacacaagaagtcccacattcgctagacaagatcattcgagtaccttaagctctcattcgactacaagatctatagaacattaaggcaaa |
200 |
Q |
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| T |
737947 |
aatatagcagaacacaacaagtcccacattcgctagacaagatcattcgagtaccttaagctctcattcgactacaagatctatagaacattaaggcaaa |
738046 |
T |
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| Q |
201 |
tctcaagcatatgcatgatggaccatcctaaagcaaacatatgatttttacctattctttaatcagggattaagatctgattgtttaagggcnnnnnnnn |
300 |
Q |
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| T |
738047 |
tctcaagcatatgtatgatggaccatcctaaagcaaacatatgatttttacctatt-tttaatcagggattaagatctgattgcttaagggcaaaaaaaa |
738145 |
T |
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| Q |
301 |
gagatttttatattgttaaaatcattacttac--agagatgttatgtaaagta |
351 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
738146 |
gagatttttatattgttaaagtcattacttacagagagatgttatgtaaagta |
738198 |
T |
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