View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_24 (Length: 357)
Name: NF9731_low_24
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 341
Target Start/End: Complemental strand, 27741278 - 27740943
Alignment:
| Q |
7 |
tttttgcaatagacacaa--ttgaataaaacaatacactatttcttccaattcccagnnnnnnnncaatcccttcattcatcactgcacgcacgagcttg |
104 |
Q |
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| T |
27741278 |
tttttgcaatagacacaaaattgaataaaacaatacacagtttcttccaattccaagagttttt-caatcccttcattcatcactgcacgcacgagcttg |
27741180 |
T |
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| Q |
105 |
aggatattataatgggggaaatgaacctatcatcgccatcaaagtcgtttcggcttcgaagtcagagtctcaactcgctccgtctgcggcgaatctttga |
204 |
Q |
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| T |
27741179 |
aggatattataatgggggaaatgaacctatcatcgccatcaaagtcgtttcggcttcgaagtcagagtctcaactcgctccgtctgcggcgaatctttga |
27741080 |
T |
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| Q |
205 |
catgtttgataaaaatggtgattcaatgataactgtggaggaaataagccaggctctcaacctgctgggattagaagctgagttcaaagaggttgattcc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27741079 |
catgtttgataaaaatggtgattcaatgataactgtggaggaaataagccaggctctcaacctgctgggattagaagctgagttcaaagaggttgattcc |
27740980 |
T |
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| Q |
305 |
atgattaagtgagttagttcatccacacttttcattt |
341 |
Q |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
27740979 |
atgatcaagtgagttagttcatccacacttttcattt |
27740943 |
T |
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