View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_25 (Length: 339)
Name: NF9731_low_25
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 28816735 - 28817043
Alignment:
| Q |
18 |
ataaatgtagtactattaggtccaaagttagcaaagaaaagtgtaagtccgaaaagtatagcaaacatgactgggtttccattacaaaaaccatattttg |
117 |
Q |
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| T |
28816735 |
ataaatgtagtactattaggtccaaagttagcaaagaaaagtgtaagtccgaaaagtatagcaaacatgactgggtttccattacaaaaactatattttg |
28816834 |
T |
|
| Q |
118 |
aaccattcttgcatgcagattcttctcccctgaatgatctataattgtgtcctagaaaccacatacaaacagacataacaaggaatccaacgagctggat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28816835 |
aaccattcttgcatgcagattcttctcccctgaatgatctataattgtgtcctagaaaccacatacaaacagacataacaaggaatccaatgagctggat |
28816934 |
T |
|
| Q |
218 |
tctgaatcgtccgatcttttcaattaggaaaactgtgcaccagtatcccggtaccgtggcgaccaaggcaaccgcaaacatcgctcgtgagagctgaaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28816935 |
tctgaatcgtccgatcttttcaattaggaaaactgtgcaccagtatcccggtaccgtggcgatcaaggcaaccgcaaacatcgctcgtgagagctgaaac |
28817034 |
T |
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| Q |
318 |
acttcctct |
326 |
Q |
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||||||||| |
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| T |
28817035 |
acttcctct |
28817043 |
T |
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