View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9731_low_27 (Length: 315)

Name: NF9731_low_27
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9731_low_27
NF9731_low_27
[»] chr1 (1 HSPs)
chr1 (6-299)||(42684180-42684472)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 6 - 299
Target Start/End: Complemental strand, 42684472 - 42684180
Alignment:
Q  6 agacgtcatagtgttctatcatgatcaatctaaagtagtacagnnnnnnnngtaggtatatcacaatttcagtgttgtcagtcgtgcatcgcgaaaaata 105  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42684472 agacgtcatagtgttctatcatgatcaatctaaagtagtacagaaaaaaa-gtaggtatatcacaatttcagtgttgtcagtcgtgcatcgcgaaaaata 42684374  T
Q  106 gtattcttttttattttcaaattccgctacactgcaatgttatagcggtgtgaagaaatggtatagccactatttggcaatacattatactaaattgtgc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42684373 gtattcttttttattttcaaattccgctacactgcaatgttatagcggtgtgaagaaatggtatagccactatttggcaatacattatactaaattgtgc 42684274  T
Q  206 atcacaaaacattagcagtttattaaaactctgctacaatacaacaccatagcacctctatatcagctatttgagagcactaaattattcataa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42684273 atcacaaaacattagcagtttattaaaactctgctacaatacaacactatagcacctctatatcagctatttgagagcactaaattattcataa 42684180  T

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