View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9731_low_29 (Length: 305)
Name: NF9731_low_29
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_29 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (3 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 10519020 - 10519295
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10519020 |
aagcatagagacaatcgaggagttagagctgatatggggaaaacaaagtgacgactcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
10519119 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10519120 |
aatttgaagagcctgaatatttgtttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
10519219 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatgga |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10519220 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacctagaaatatgtggtatgga |
10519295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 9851274 - 9851549
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9851274 |
aagcaaagagcaaattgaggagttagagctgatatggggaaaacatagtgaagattcgcaagaagtgaaagttgtgctcgatatgttgcaaccaccaata |
9851373 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
||||| ||| || || ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9851374 |
aatctgaaggtgcttaaaattgacttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
9851473 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatgga |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9851474 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatacgtggtatgga |
9851549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 10262233 - 10262506
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10262233 |
aagcaaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
10262332 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | |||| || |
|
|
| T |
10262333 |
aatctaaagagcctgaaaatttgtttgtatggtgggacaagctttccgagttggttgggaaattcttcgttttataacatggtatctctgcgcatcacta |
10262432 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatg |
281 |
Q |
| |
|
|||||||| ||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10262433 |
attgtgaatattgtatgacacttccacccatagggcagttaccttctctcaaggacctagaaatatgtggtatg |
10262506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 10374373 - 10374104
Alignment:
| Q |
14 |
agagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaataaatcta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||| ||||||||| | ||||||||||||||| |||||||| | |
|
|
| T |
10374373 |
agagaaaattgaggagttagagctgatatggggaaaacaaagtgaagacttgcaaaaagtaaaagttgtgttggatatgttgcaaccagcaataaatttg |
10374274 |
T |
|
| Q |
114 |
aagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtg |
213 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10374273 |
aagagcctgcatatttgcttgtatggtgggacaagctttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtg |
10374174 |
T |
|
| Q |
214 |
aaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatgga |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10374173 |
aaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatacgtggtatgga |
10374104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 9840396 - 9840671
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9840396 |
aagcaaagagcaaattgaggagttagagctgatatggggaaaacatagtgaagattcgcaagaagtgaaagttgtgctcgatatgttgcaaccaccaata |
9840495 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
||||| ||| || || ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9840496 |
aatctgaaggtgcttaaaattgacttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatcgtatctctcagtatcagta |
9840595 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatgga |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
9840596 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacgtagaaatacgtggtatgga |
9840671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 10033535 - 10033810
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10033535 |
aagcaaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatattttgcaaccaccaata |
10033634 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||| | |||| || |
|
|
| T |
10033635 |
aatctaaagagcctgaatatttgtttgtatggtgggacaagctttccgagttggttgggaaattctttgttttctaacatggtatctcttcgcatcacta |
10033734 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatgga |
283 |
Q |
| |
|
|||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10033735 |
attgtgaatattgtatgacacttccacccatagggcagttaccttctctcaaggacatagaaatacgtggtatgga |
10033810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 10128466 - 10128735
Alignment:
| Q |
14 |
agagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaataaatcta |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10128466 |
agagaaaattgaggagttagaactgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaataaatcta |
10128565 |
T |
|
| Q |
114 |
aagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtg |
213 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||| | |||| |||||||| |
|
|
| T |
10128566 |
aagagcctgaatatttgtttgtatggtgggacaagctttccgagttggttgggaaattctttgttttctaacatggtatctctgcgcatcactaattgtg |
10128665 |
T |
|
| Q |
214 |
aaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatgga |
283 |
Q |
| |
|
|| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10128666 |
aatattgtatgacacttccacccatagggcagttaccttctctcaaggacatagaaatacgtggtatgga |
10128735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 10090325 - 10090598
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10090325 |
aagcaaagagaaaattgaggagttagagctgatatggggaaagcaaagtgaagactcgcaaaaagtgaaagttgtgctcgatatgttgcaacctccaata |
10090424 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
10090425 |
aatctgaagagcttgaatatttgcttgtatggtgggacaagctttccgagttggttgggaaattcttcgttttctaacatggtatccctctgtatcagta |
10090524 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatg |
281 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||| || |||||||||||||||||| || |||||||||||||| |
|
|
| T |
10090525 |
attgtgaatattgtgtgacacttccacccataggtcaattaccttctctcaaggacctaaaaatatgtggtatg |
10090598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 10197208 - 10197481
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10197208 |
aagcaaagagaaaattgaggagttagagctgatatggggaaagcaaagtgaagactcgcaaaaagtgaaagttgtgctcgatatgttgcaacctccaata |
10197307 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
10197308 |
aatctgaagagcttgaatatttgcttgtatggtgggacaagctttccgagttggttgggaaattcttcgttttctaacatggtatccctctgtatcagta |
10197407 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatg |
281 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||| || |||||||||||||||||| || |||||||||||||| |
|
|
| T |
10197408 |
attgtgaatattgtgtgacacttccacccataggtcaattaccttctctcaaggacctaaaaatatgtggtatg |
10197481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 10582145 - 10582420
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
10582145 |
aagcaaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagagtcgcataaagtgaaagttgtgcttgatatgttgcaaccagcaata |
10582244 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
||| | |||||||||||||||| || ||||| |||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||| | |||| || |
|
|
| T |
10582245 |
aatttgaagagcctgaatatttgcttatatggcgggacaagttttcctagttggttgggaaattcttcgttttctaacatggtatccctccgcatcacta |
10582344 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatgga |
283 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
10582345 |
attgtgaatattgtgtgacacttccaccaatagggcagttaccttctcttaaggacctagaaatatgtggtatgga |
10582420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 10665061 - 10665327
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| |||||| |||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10665061 |
aagcaaagagaagattgagaagttagagctgatatggggaaaacaaagtgaagattcgcaaaaagtgaaagttgtactcgatatgttgcaaccaccaata |
10665160 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
||| | |||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||| ||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
10665161 |
aatttgaagagcctgaatattttcttgtatggtggaacaagctttccaagttggttgggaaattcttcgttttctaacatggtatccctctgtatcagta |
10665260 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatg |
274 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||| ||| ||||||||||||||||| || |||||||||| |
|
|
| T |
10665261 |
attgtgaatattgtgtgatacttccaccccttgggaagttaccttctctcaagaacctagaaatatg |
10665327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 10432578 - 10432305
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10432578 |
aagcaaagagaaaattgaggagttagagctgatatggggaaaacaaagtgaagactcgcacaaagtgaaagttgtgctggatatgttgcaaccaccaatg |
10432479 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
| | | |||||||| ||||||| ||||||| ||| ||||| |||||||||||| |||||| ||||||||||| |||||||||| ||| ||||||||| |
|
|
| T |
10432478 |
agtatgaagagcctaaatatttgcttgtatgatggtacaagctttccgagttggctgggaaattcttcgttttcggacatggtatccctctgtatcagta |
10432379 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatg |
281 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
10432378 |
attgtgaatattgtgtgacacttccacccttagggcagttaccttctctcaaggacctacaaatatgtggtatg |
10432305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 11770769 - 11771042
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| ||| ||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |||| || |||||| |
|
|
| T |
11770769 |
aagcaaagaaaaaattgaggatttagagctaatatggggaaaacaaagtgacgagtcgcaaaaagtgaaagatgtgctcgatatgctgcagccgccaata |
11770868 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||| |||| |||||||||||| ||| |||| |||| |
|
|
| T |
11770869 |
aatctgaagagcctgaatatttgcttgtatggtgggacaagctttccgagttggctgggaaattcttcattttctaacatggtatccctccgtattagta |
11770968 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatg |
281 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
11770969 |
attgtgaatattgtgtgacacttccacccatagggcagctaccttctctcaaggagctagaaatatgtggtatg |
11771042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 10362332 - 10362062
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10362332 |
aagcaaagagaaaattcaggagttagagctgatatggggaaaacaaagtgaagagtcgcaaaaagtgaaagttgtgcttgatatgttgcaaccaccaata |
10362233 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
||| | |||||||||||||| || ||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||| | |||| || |
|
|
| T |
10362232 |
aatttgaagagcctgaatat---ttgccatggtgggacaagttttcctagttggttgggaaattcttcgttttctaacatggtatccctccgcatcacta |
10362136 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatg |
281 |
Q |
| |
|
|||||||| ||||||||| ||||||| || ||||||||||||||||||| |||| | || |||||||||||||| |
|
|
| T |
10362135 |
attgtgaatattgtgtgatacttccacccttagggcagttaccttctctgaaggtcctaaaaatatgtggtatg |
10362062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 11780516 - 11780243
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| ||| ||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
11780516 |
aagcaaagaaaaaattgaggatttagagctaatatggggaaaacaaagtgacgagtcgcaaaaagtgaaagttgtgctcgatatgctgcagccgccaata |
11780417 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| ||||| |||||| |||||| | |||| |||| ||||||||||| ||| |||| |||| |
|
|
| T |
11780416 |
aatctgaagagcctgaatatttgcttgtatggtgggacaagctttccaagttggctgggaaatccttcattttcaaacatggtatccctccgtattagta |
11780317 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatg |
281 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
11780316 |
attgtgaatattgtgtgacacttccacccatagggcagctaccttctctcaaggagttagaaatatgtggtatg |
11780243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 10078956 - 10079210
Alignment:
| Q |
19 |
aaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaataaatctaaagag |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
10078956 |
aaattgaggagttagagatgatatggggaaagcaaagtgaagattcacaaaaagtgaaagtattgctcgatatgttgcaaccaccaataaatttgaagag |
10079055 |
T |
|
| Q |
119 |
cctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaat |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| |||||||||| |||| ||||||||||| |||| ||||||| ||| |||| | |||||||| || |
|
|
| T |
10079056 |
tctgaatatttgcttgtatggtgggacaagcttttcgagttggttaggaaattcttcgttttgtaacttggtatccctcgtaatcactgattgtgaatat |
10079155 |
T |
|
| Q |
219 |
tgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatat |
273 |
Q |
| |
|
||||||| ||||||| | || ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
10079156 |
tgtgtgatacttccaccacttgggcaactaccttctctcaaggacctagaaatat |
10079210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 10185926 - 10186180
Alignment:
| Q |
19 |
aaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaataaatctaaagag |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||| || |||||||||||||| |||| |||||||||||||||||||||||| | ||||| |
|
|
| T |
10185926 |
aaattgaggagttagagatgatatggggaaaacaaagtgaagattcacaaaaagtgaaagtattgctagatatgttgcaaccaccaataaatttgaagag |
10186025 |
T |
|
| Q |
119 |
cctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaat |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| |||||||||| |||| ||||||||||| |||| |||| || ||| |||| | |||||||| || |
|
|
| T |
10186026 |
tctgaatatttgcttgtatggtgggacaagcttttcgagttggttaggaaattcttcgttttgtaacttggtgtccctcgtaatcactgattgtgaatat |
10186125 |
T |
|
| Q |
219 |
tgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatat |
273 |
Q |
| |
|
|||| || ||||||| | || ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
10186126 |
tgtgcgatacttccaccacttgggcaactaccttctctcaaggacctagaaatat |
10186180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 10530188 - 10530447
Alignment:
| Q |
14 |
agagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaataaatcta |
113 |
Q |
| |
|
|||| ||||||||||||||| ||| | |||||||||||||||||||| |||| ||||||||||||||| || |||||||||||||||||||||| ||| |
|
|
| T |
10530188 |
agagcaaattgaggagttaggtctgttgtggggaaaagaaagtgaagactcgcgaaaagtgaaagttgttctagatatgttgcaaccaccaataactctg |
10530287 |
T |
|
| Q |
114 |
aagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtg |
213 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||||| | |||| | |||| |||| ||||||||||||||| ||||| | ||| |||||||| |
|
|
| T |
10530288 |
aagagccttcatattggcttgtatggcgggacaagttttccaaattgggtcggaaactctttgttttataacatggtgtctcttcgcatcgataattgtg |
10530387 |
T |
|
| Q |
214 |
aaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatat |
273 |
Q |
| |
|
|| |||| ||||||||||| | ||||||||| |||||||||| |||||| || |||||| |
|
|
| T |
10530388 |
aatattgcatgacacttccaccgctagggcagctaccttctctaaaggacctaaaaatat |
10530447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 10678979 - 10679238
Alignment:
| Q |
14 |
agagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaataaatcta |
113 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||||||| |||||||||| |||| ||||||||||||||| || |||||||||||||||||||||| ||| |
|
|
| T |
10678979 |
agagcaaattgaggagttagagctgttgtggggaaaacaaagtgaagactcgcgaaaagtgaaagttgttctagatatgttgcaaccaccaataagtctg |
10679078 |
T |
|
| Q |
114 |
aagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtg |
213 |
Q |
| |
|
||||| || |||| |||||||| |||||||||||||| | |||| | |||| |||| ||| ||||||||||| ||||| | ||| ||||| || |
|
|
| T |
10679079 |
aagaggcttcgtattggcttgtatggcgggacaagttttccaaattgggtaggaaactctttgttctataacatggtgtctcttcgcatcgataattctg |
10679178 |
T |
|
| Q |
214 |
aaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatat |
273 |
Q |
| |
|
|| |||| ||||||||||| | ||||||||| |||||||||| |||||| || |||||| |
|
|
| T |
10679179 |
aatattgcatgacacttccaccgctagggcagctaccttctctaaaggacctaaaaatat |
10679238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 10502121 - 10502372
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| |||||||||||| ||||||||| || ||||||| ||| ||| |||||| || ||||||| |||| ||| || || |||||||| ||| || || |
|
|
| T |
10502121 |
aagcaaagagaaaattgaagagttagagttgttatggggcaaacaaattgaagactcacaaaaagagaaaaatgtacttgagatgttgcatccatcagta |
10502220 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
|| | |||| || | || | |||||| | |||||||| ||||| | ||||||||||| ||||||||||| |||||||||||| ||| |||| || |
|
|
| T |
10502221 |
aacttgaagaaactaatcatagacttgtatagcgggacaagctttccaaattggttgggaaattcttcgttttctaacatggtatccatcaacatcacta |
10502320 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaa |
259 |
Q |
| |
|
| |||||| ||||||||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
10502321 |
actgtgaatattgtgtgacacttccaccgttagggcaactaccttctctcaa |
10502372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 263
Target Start/End: Original strand, 13172690 - 13172821
Alignment:
| Q |
132 |
ttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttc |
231 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | ||| |||| ||||||||| || | ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
13172690 |
ttgtatggtgggacaagctttccgagttggttgggtgatccttttttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
13172789 |
T |
|
| Q |
232 |
catccctagggcagttaccttctctcaaggac |
263 |
Q |
| |
|
|||| ||||| || ||||||||||||||||| |
|
|
| T |
13172790 |
catcactaggtcaactaccttctctcaaggac |
13172821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 11147327 - 11147206
Alignment:
| Q |
69 |
aaagtgaaagttgtgctcgatatgttgcaaccaccaataaatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaa |
168 |
Q |
| |
|
|||| ||||| |||||| ||||||||| |||| || |||| ||||| || |||| ||| | ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
11147327 |
aaagggaaagatgtgcttgatatgttgaaacccccggtaaacctaaacagattgaacattgacttgtatggtgggacaagctttccaagttggttgggag |
11147228 |
T |
|
| Q |
169 |
gttcttcgttttataacatggt |
190 |
Q |
| |
|
|||||| |||| ||||||||| |
|
|
| T |
11147227 |
attcttcattttctaacatggt |
11147206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 263
Target Start/End: Original strand, 13334566 - 13334697
Alignment:
| Q |
132 |
ttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttc |
231 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| | ||| ||||| ||||||||| || | ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
13334566 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
13334665 |
T |
|
| Q |
232 |
catccctagggcagttaccttctctcaaggac |
263 |
Q |
| |
|
|| | ||||| || ||||||||||||||||| |
|
|
| T |
13334666 |
caccactaggccaactaccttctctcaaggac |
13334697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 263
Target Start/End: Original strand, 13345745 - 13345876
Alignment:
| Q |
132 |
ttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttc |
231 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | | | ||||| ||||||||| || | ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
13345745 |
ttgtatggtgggacaagctttccgagttggttgggtgatccattgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
13345844 |
T |
|
| Q |
232 |
catccctagggcagttaccttctctcaaggac |
263 |
Q |
| |
|
|| | ||||| || ||||||||||||||||| |
|
|
| T |
13345845 |
caccactaggccaactaccttctctcaaggac |
13345876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 263
Target Start/End: Complemental strand, 11129497 - 11129308
Alignment:
| Q |
74 |
gaaagttgtgctcgatatgttgcaaccaccaataaatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttct |
173 |
Q |
| |
|
||||| |||||| ||||||||| ||| || |||| ||||| || |||| ||||| || ||||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
11129497 |
gaaagatgtgcttgatatgttgatacccccggtaaacctaaacagattgaacatttacttttatggcgggacaagttttcctagttggttgggagattct |
11129398 |
T |
|
| Q |
174 |
tcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggac |
263 |
Q |
| |
|
|| |||| ||||||||| || || | || |||||| | ||||||||||||||||| | ||||| || || |||||||||||||| |
|
|
| T |
11129397 |
tcattttctaacatggtgtcactttgcatagaaaattgtcgatattgtgtgacacttccaccactaggacaactatcttctctcaaggac |
11129308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 11158485 - 11158369
Alignment:
| Q |
74 |
gaaagttgtgctcgatatgttgcaaccaccaataaatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttct |
173 |
Q |
| |
|
||||| |||||| ||||||||| ||| || |||| ||||| || |||| ||| | ||||||||||||||||| ||||| |||||||||||| |||| |
|
|
| T |
11158485 |
gaaagatgtgcttgatatgttgatacccccggtaaacctaaacagattgaacattgacttgtatggtgggacaagctttccaagttggttgggagattct |
11158386 |
T |
|
| Q |
174 |
tcgttttataacatggt |
190 |
Q |
| |
|
|| |||| ||||||||| |
|
|
| T |
11158385 |
tcattttctaacatggt |
11158369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 263
Target Start/End: Original strand, 13162642 - 13162773
Alignment:
| Q |
132 |
ttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttc |
231 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||| | ||| ||||| ||||||||| || | ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
13162642 |
ttgtatggtggaacaagcttcccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
13162741 |
T |
|
| Q |
232 |
catccctagggcagttaccttctctcaaggac |
263 |
Q |
| |
|
|| | ||||| || ||||||||||||||||| |
|
|
| T |
13162742 |
caccactaggccaactaccttctctcaaggac |
13162773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 263
Target Start/End: Original strand, 10890902 - 10891096
Alignment:
| Q |
69 |
aaagtgaaagttgtgctcgatatgttgcaaccaccaataaatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaa |
168 |
Q |
| |
|
|||| ||||| |||||| ||||||||| |||| || |||| ||||| || |||| ||| | |||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
10890902 |
aaagggaaagatgtgcttgatatgttgaaacccccggtaaacctaaacagattgaacattgacatgtatggtgggacaagctttccatgttggttaggag |
10891001 |
T |
|
| Q |
169 |
gttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggac |
263 |
Q |
| |
|
|||||| |||| ||||||||| || || | || ||||||| | ||||||||||||||||| | ||||| | || |||||||||||||| |
|
|
| T |
10891002 |
attcttcattttctaacatggtgtcactgtgcattgaaaattgtggatattgtgtgacacttccaccactaggacgactatcttctctcaaggac |
10891096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 56136 - 55861
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56136 |
aagcaaagagaaaattgaggagttagagctgatatggggaaatcaaagtgaagactcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
56037 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
||| | |||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
56036 |
aatttgaagagcttgaatatttgtttgtatggtgggacaagctttccgagttggttgggaagttcttcattttataacatggtatctctcagtatcagta |
55937 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatgga |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
55936 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacttagaaatatgtggtatgga |
55861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 26908429 - 26908696
Alignment:
| Q |
14 |
agagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaataaatcta |
113 |
Q |
| |
|
||||||||| |||||||||||| || | ||||||||| |||||||||| || | | |||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
26908429 |
agagaaaatcgaggagttagagttgctttggggaaaacaaagtgaagattcactacaagtgaaatttgtgcttgatatgttgcatccaccaataaatctg |
26908528 |
T |
|
| Q |
114 |
aagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtg |
213 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||||||| ||||||||||||||| ||||| |||| ||| ||||| || || || | |||||||| |
|
|
| T |
26908529 |
aagagcctgaaaattgacttgtatggtgggacaagtttcccgagttggttgggagactcttcattttctaagatggtgtcccttcacataactaattgtg |
26908628 |
T |
|
| Q |
214 |
aaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatg |
281 |
Q |
| |
|
|| ||| ||||||||| ||||||| || |||||| |||||||||| |||||||| ||||||| |
|
|
| T |
26908629 |
aattttgcccaacacttccacccctaggacaactaccttttctcaaggacctagaaatacatggtatg |
26908696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 44956211 - 44955938
Alignment:
| Q |
8 |
aagcagagagaaaattgaggagttagagctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaata |
107 |
Q |
| |
|
||||| |||| ||||||| || || |||||| ||||||||||| | |||||||| |||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
44956211 |
aagcaaagagcaaattgaagacttggagctgctatggggaaaacatagtgaagactcgctaaaagtgaaagtcgtgcttgatatgttgcaaccaccaatg |
44956112 |
T |
|
| Q |
108 |
aatctaaagagcctgaatatttatttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagta |
207 |
Q |
| |
|
|| || ||||| || || ||| | || |||||||||||||| ||||| | |||||||||| || |||||||| |||||||| || || | ||||||| |
|
|
| T |
44956111 |
aacctgaagagtctaaaaattgacttctatggtgggacaagctttccaaattggttgggagatttttcgttttctaacatggcgtccctttgcatcagta |
44956012 |
T |
|
| Q |
208 |
attgtgaaaattgtgtgacacttccatccctagggcagttaccttctctcaaggacatagaaatatgtggtatg |
281 |
Q |
| |
|
|||| | ||||||| ||||||||| | || ||||| | |||| ||||||||| ||||||||| ||||||| |
|
|
| T |
44956011 |
attgagggtattgtgtaacacttccaccgctggggcaactgccttttctcaaggatctagaaatatatggtatg |
44955938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 260
Target Start/End: Original strand, 11486598 - 11486822
Alignment:
| Q |
36 |
ctgatatggggaaaagaaagtgaagagtcgcaaaaagtgaaagttgtgctcgatatgttgcaaccaccaataaatctaaagagcctgaatatttatttgt |
135 |
Q |
| |
|
|||| |||||||||| ||||||||| |||| |||||||||||||||||| ||||||||||| ||||||||||| ||| | |||| ||| | |||| |
|
|
| T |
11486598 |
ctgaaatggggaaaattaagtgaagactcgctaaaagtgaaagttgtgcttgatatgttgcatccaccaataaactcgaagggactgagcattgacttgt |
11486697 |
T |
|
| Q |
136 |
atggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttccatc |
235 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||| |||| ||| ||||| || || |||| | |||||||| |||| ||||||||||| | |
|
|
| T |
11486698 |
atggtgggacaagttttccgaattggttgggtgattcttcattttctaaaatggtgtccctttacatcaatgattgtgaatattgcatgacacttccacc |
11486797 |
T |
|
| Q |
236 |
cctagggcagttaccttctctcaag |
260 |
Q |
| |
|
|||||||| |||| ||||||||| |
|
|
| T |
11486798 |
gctagggcaactaccatctctcaag |
11486822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 263
Target Start/End: Complemental strand, 134298 - 134167
Alignment:
| Q |
132 |
ttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttc |
231 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | ||| |||| ||||||||| || | ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
134298 |
ttgtatggtgggacaagctttccgagttggttgggtgatccttttttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
134199 |
T |
|
| Q |
232 |
catccctagggcagttaccttctctcaaggac |
263 |
Q |
| |
|
|||| ||||| || ||||||||||||||||| |
|
|
| T |
134198 |
catcactaggtcaactaccttctctcaaggac |
134167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 263
Target Start/End: Complemental strand, 144346 - 144215
Alignment:
| Q |
132 |
ttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttc |
231 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| | ||| ||||| ||||||||| || | ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
144346 |
ttgtatggtggaacaagctttccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
144247 |
T |
|
| Q |
232 |
catccctagggcagttaccttctctcaaggac |
263 |
Q |
| |
|
|| | ||||| || ||||||||||||||||| |
|
|
| T |
144246 |
caccactaggccaactaccttctctcaaggac |
144215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 263
Target Start/End: Complemental strand, 152651 - 152520
Alignment:
| Q |
132 |
ttgtatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttc |
231 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||| | ||| ||||| ||||||||| || | ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
152651 |
ttgtatggtggaacaagcttcccgagttggttgggtgatcctttgttttctaacatggtgtccttgtgtatctcgaattgtgaatattgtgtaacacttc |
152552 |
T |
|
| Q |
232 |
catccctagggcagttaccttctctcaaggac |
263 |
Q |
| |
|
|| | ||||| || ||||||||||||||||| |
|
|
| T |
152551 |
caccactaggccaactaccttctctcaaggac |
152520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 283
Target Start/End: Complemental strand, 17851333 - 17851185
Alignment:
| Q |
135 |
tatggtgggacaagttttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttccat |
234 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||| ||||||||||| |||||| || | | | ||||||||| ||||| |||| ||||||||||| |
|
|
| T |
17851333 |
tatggtgggacaagttttccaagttggctaggagattcttcgttttctaacatcgtgttcttgggcatcagtaatggtgaacattgcatgacacttccac |
17851234 |
T |
|
| Q |
235 |
ccctagggcagttaccttctctcaaggacatagaaatatgtggtatgga |
283 |
Q |
| |
|
| || |||||| |||||||||| |||||| || ||| ||||||||||| |
|
|
| T |
17851233 |
cgctggggcagctaccttctctgaaggacctactaatttgtggtatgga |
17851185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 29838317 - 29838430
Alignment:
| Q |
150 |
tttccgagttggttgggaagttcttcgttttataacatggtatctctcagtatcagtaattgtgaaaattgtgtgacacttccatccctagggcagttac |
249 |
Q |
| |
|
||||| |||||||||||| |||||| || | ||||||||| | || || ||||||||||||||| |||| | ||||||||||| |||||||| || |
|
|
| T |
29838317 |
tttccaagttggttgggagattcttcattctttaacatggtgtaccttagcatcagtaattgtgaatattgccttacacttccatcactagggcatctat |
29838416 |
T |
|
| Q |
250 |
cttctctcaaggac |
263 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29838417 |
cttctctcaaggac |
29838430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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