View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_33 (Length: 252)
Name: NF9731_low_33
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_33 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 23820208 - 23820449
Alignment:
| Q |
11 |
cacagagacaacaaaatttggtggaatgggctaagccatatctatccaacaagcgtaagattttgcgcgtgttggatagccgtcttgagggccaatatga |
110 |
Q |
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| T |
23820208 |
cacaaagacaacacaatttggtggaatgggctaagccatatctatccaacaagcgtaagattttgcgcgtgttggatagccgtcttgagggccaatatga |
23820307 |
T |
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| Q |
111 |
attagacgatatttataaggttgctacactctccctaaggtgcctttctgtagaagccaagttgagaccaaacatggatgaggttgttacaaatttggag |
210 |
Q |
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| T |
23820308 |
attagaagatatttataaggttgctacactctccctaaggtgcctttctgtagaagccaagttgagaccaaacatggatgaggttgttacaaatttggag |
23820407 |
T |
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| Q |
211 |
cagttgcaggttcctcgtgtaaatgaaagcaacaagaatcgt |
252 |
Q |
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| T |
23820408 |
cagttgcaggttcctcatgtaaatgaaagcaacaagaatcgt |
23820449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 23833216 - 23833452
Alignment:
| Q |
16 |
agacaacaaaatttggtggaatgggctaagccatatctatccaacaagcgtaagattttgcgcgtgttggatagccgtcttgagggccaatatgaattag |
115 |
Q |
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| T |
23833216 |
agacaacacaatttggtggaatgggcaaagccttatctatccaacaagcataagattttgcgcgtgttggatagtcgccttgaaggccaatacgaattag |
23833315 |
T |
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| Q |
116 |
acgatatttataaggttgctacactctccctaaggtgcctttctgtagaagccaagttgagaccaaacatggatgaggttgttacaaatttggagcagtt |
215 |
Q |
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| T |
23833316 |
aagatgtttttaaggttgctatactctccctacggtgcctttcagtagaagccaagttgagaccaaacatggatgaggttgttacaaatttggagcagtt |
23833415 |
T |
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| Q |
216 |
gcaggttcctcgtgtaaatgaaagcaacaagaatcgt |
252 |
Q |
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| T |
23833416 |
gcaggttcctcatgtaaatggatgcaaccagaatcgt |
23833452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 23829383 - 23829587
Alignment:
| Q |
19 |
caacaaaatttggtggaatgggctaagccatatctatccaacaagcgtaagattttgcgcgtgttggatagccgtcttgagggccaatatgaattagacg |
118 |
Q |
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| T |
23829383 |
caacacaatttggtggaatgggctaagccttatctaaccaacaagcgtaaaattttgcgcgtgttggatagccgtcttgaaggccaatatgagttagaag |
23829482 |
T |
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| Q |
119 |
atatttataaggttgctacactctccctaaggtgcctttctgtagaagccaagttgagaccaaacatggatgaggttgttacaaatttggagcagttgca |
218 |
Q |
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| T |
23829483 |
atgcctataaagttgctacactatccctaaggtgcctttcaatagaagccaagttgagaccaaacatggatgaggttgttacggatttggagaagttgca |
23829582 |
T |
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| Q |
219 |
ggttc |
223 |
Q |
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| T |
23829583 |
ggttc |
23829587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 23825482 - 23825684
Alignment:
| Q |
16 |
agacaacaaaatttggtggaatgggctaagccatatctatccaacaagcgtaagattttgcgcgtgttggatagccgtcttgagggccaatatgaattag |
115 |
Q |
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| T |
23825482 |
agacaacataatttggtggaatgggctaagccttgtctatccaacaagcgtaagattttgcacgtgtttgataatcgccttgaaggccaatatgaaatag |
23825581 |
T |
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| Q |
116 |
acgatatttataaggttgctacactctccctaaggtgcctttctgtagaagccaagttgagaccaaacatggatgaggttgttacaaatttggagcagtt |
215 |
Q |
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| T |
23825582 |
aagacgcctataaggttgctatactttccctacggtgcctttcaatagaagccaagttgagaccaaacatggatgaggttgttacaaatttggagcagtt |
23825681 |
T |
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| Q |
216 |
gca |
218 |
Q |
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||| |
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| T |
23825682 |
gca |
23825684 |
T |
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