View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_35 (Length: 251)
Name: NF9731_low_35
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 12749175 - 12749017
Alignment:
| Q |
13 |
catcatctcggggtgtttggtttattatgtttcaggcacattcctgatcaaattttgggatctttgaaatatatgtgccatacaagacctgatatagcat |
112 |
Q |
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| T |
12749175 |
catcatctcggggtgtttggtttattatgtttcaggcacattcctgatcaaattttgggatctttgagatatatgtgccatacaagacctgatatagcat |
12749076 |
T |
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| Q |
113 |
atggagtaggtttgatcagcaggtacatggagaaagatacaacttctcacttaattgca |
171 |
Q |
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| T |
12749075 |
atggagtaggtttgatcagcaggcacatggagaaacctacaacttctcacttaagtgca |
12749017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 200
Target Start/End: Original strand, 27236524 - 27236663
Alignment:
| Q |
61 |
caaattttgggatctttgaaatatatgtgccatacaagacctgatatagcatatggagtaggtttgatcagcaggtacatggagaaagatacaacttctc |
160 |
Q |
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| T |
27236524 |
caaattgtgggttcattgaggtatttgtgccatacaagacctgatattgcatatggtgtaggtttgatcagcaggtacatggtgaaacctaccacctcac |
27236623 |
T |
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| Q |
161 |
acttaattgcaactaagagaattcttagatatgtgaaggg |
200 |
Q |
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| T |
27236624 |
atctagttgcagcaaagaggattctgagacatgtgaaggg |
27236663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 9506887 - 9507037
Alignment:
| Q |
61 |
caaattttgggatctttgaaatatatgtgccatacaagacctgatatagcatatggagtaggtttgatcagcaggtacatggagaaagatacaacttctc |
160 |
Q |
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| T |
9506887 |
caaattgtgggttcattgaggtatttgtgccatacaagacctgatattgcatatggtgtaggtttgatcagcaggtacatggtgaaacctaccacctcac |
9506986 |
T |
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| Q |
161 |
acttaattgcaactaagagaattcttagatatgtgaagggcacttgcaatt |
211 |
Q |
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| T |
9506987 |
acctagttgcagcaaagaggattctgagatatgtgaagggtactagcaatt |
9507037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 211
Target Start/End: Original strand, 56562496 - 56562621
Alignment:
| Q |
86 |
tgtgccatacaagacctgatatagcatatggagtaggtttgatcagcaggtacatggagaaagatacaacttctcacttaattgcaactaagagaattct |
185 |
Q |
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| T |
56562496 |
tgtgccatacaagacctgatattacatatggtgtaggtttgatcagcaggtacatggtgaaacctaccacctcacacctagttgcagcaaagaggatttt |
56562595 |
T |
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| Q |
186 |
tagatatgtgaagggcacttgcaatt |
211 |
Q |
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| T |
56562596 |
gagatatgtgaagggtactagcaatt |
56562621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 53009247 - 53009316
Alignment:
| Q |
61 |
caaattttgggatctttgaaatatatgtgccatacaagacctgatatagcatatggagtaggtttgatca |
130 |
Q |
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| T |
53009247 |
caaattgtgggttcattgaggtatttgtgccatacaagacctgatattgcatatggtgtaggtttgatca |
53009316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 5988684 - 5988745
Alignment:
| Q |
86 |
tgtgccatacaagacctgatatagcatatggagtaggtttgatcagcaggtacatggagaaa |
147 |
Q |
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| T |
5988684 |
tgtgccatacaagacctgatattgcatatggtgtaggtttgatcagcaggtacatggtgaaa |
5988745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 45486649 - 45486524
Alignment:
| Q |
86 |
tgtgccatacaagacctgatatagcatatggagtaggtttgatcagcaggtacatggagaaagatacaacttctcacttaattgcaactaagagaattct |
185 |
Q |
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| T |
45486649 |
tgtgccatacaagacctgatattgcatatggtgtagatttgatcagcaggtgcatggtgaaacctaccacctcacatctagttgcagcaaagaggattat |
45486550 |
T |
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| Q |
186 |
tagatatgtgaagggcacttgcaatt |
211 |
Q |
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| T |
45486549 |
gagatatgtgaagggtactagcaatt |
45486524 |
T |
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