View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9731_low_36 (Length: 245)
Name: NF9731_low_36
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 39369176 - 39369002
Alignment:
| Q |
1 |
ccacattgtgtgaattaagcaagtgttattaattttttgttgcaaggtcaattgttgaagtagactaagagttcagaacatgctcatgctgcagaaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39369176 |
ccacattgtgtgaattaagcaagtgttattaattttttgttgcaaggtcaattgttgaagtagagtaagagttcagaacatgcttatgctgcagaaattc |
39369077 |
T |
|
| Q |
101 |
taaggcttcagtcattattgtgagaattaaggggaaaacatcaaactccaagagttctttgtgatgattcaagta |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39369076 |
taaggcttcagtcattattgtgagaattaaggggaaaacatcaaactccaagagttctttgtgatgattcaagta |
39369002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 39341463 - 39341388
Alignment:
| Q |
90 |
tgcagaaattctaaggcttcagtcattattgtgagaattaaggggaaaacatcaaactccaagagttctttgtgat |
165 |
Q |
| |
|
||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
39341463 |
tgcagaaattctattgcttcattcattattacgagaattaagggtcaaacatcaaactccaaggtttctctgtgat |
39341388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 39356335 - 39356221
Alignment:
| Q |
39 |
gttgcaaggtcaattgttgaagtagac--taagagttcagaacatgctcatgctgcagaaattctaaggcttcagtcattattgtgagaattaaggggaa |
136 |
Q |
| |
|
||||||||||||| |||| ||| ||| || ||||| |||||||||| || ||||||||||| || ||||||| |||||||| |||||||||| | |
|
|
| T |
39356335 |
gttgcaaggtcaagtgttaaagcagagattaggagtttagaacatgct-atactgcagaaattttatggcttcattcattattacgagaattaagaatca |
39356237 |
T |
|
| Q |
137 |
aacatcaaactccaag |
152 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39356236 |
aacatcaaactccaag |
39356221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University