View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9731_low_38 (Length: 243)

Name: NF9731_low_38
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9731_low_38
NF9731_low_38
[»] chr1 (17 HSPs)
chr1 (39-225)||(2020466-2020652)
chr1 (31-232)||(2011206-2011407)
chr1 (42-230)||(2012705-2012893)
chr1 (61-232)||(2007220-2007391)
chr1 (40-229)||(1793453-1793642)
chr1 (50-229)||(4334124-4334303)
chr1 (55-229)||(3379481-3379655)
chr1 (63-227)||(3373460-3373624)
chr1 (1-58)||(2020654-2020711)
chr1 (40-229)||(3362470-3362659)
chr1 (126-229)||(3342004-3342107)
chr1 (58-229)||(4322244-4322415)
chr1 (55-204)||(6600951-6601100)
chr1 (55-107)||(4332673-4332725)
chr1 (171-227)||(3193375-3193431)
chr1 (171-227)||(3202193-3202249)
chr1 (171-227)||(3211030-3211086)
[»] chr4 (1 HSPs)
chr4 (55-229)||(21238233-21238407)
[»] chr2 (3 HSPs)
chr2 (45-229)||(20953722-20953906)
chr2 (45-229)||(20935184-20935368)
chr2 (125-229)||(20924183-20924287)
[»] chr5 (1 HSPs)
chr5 (40-227)||(17970521-17970708)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 2020652 - 2020466
Alignment:
Q  39 aaaagtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaa 138  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||    
T  2020652 aaaagtcaagtcaaagtaaatgagtactcacaattatttctagttttttaagattaggcgagcttctgaacacacatagagcagttgaaatttccttaaa 2020553  T
Q  139 ctcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaata 225  Q
     |||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2020552 gtcatagaagtttatactaaaccaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagctaaata 2020466  T

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Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 31 - 232
Target Start/End: Complemental strand, 2011407 - 2011206
Alignment:
Q  31 cagcaaataaaagtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatt 130  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| ||||||||||||||||    
T  2011407 cagcaaagaaaagtcaattcaaagtaaatgagtactcacaaatatttttagttctttaagattaggcgagcttctgaacacacttagagcagttgaaatt 2011308  T
Q  131 tccttcaactcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactgat 230  Q
    |||||||||||||||||||||||||||||| | ||| |  |||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||    
T  2011307 tccttcaactcattgaagtttatacttaaccatagagacattagattaatacaaggtgtaggaagctttagtggcacaacacctgcagctaaatactgat 2011208  T
Q  231 gt 232  Q
    ||    
T  2011207 gt 2011206  T

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Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 42 - 230
Target Start/End: Complemental strand, 2012893 - 2012705
Alignment:
Q  42 agtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactc 141  Q
    |||||||  ||| ||||||||||||||||||||| | || || |||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||    
T  2012893 agtcaagccaaactaaatgagtactcacaaatatatttaattctttaagattaggcgagcttctgaacacacatagagcagttgaaatttctttcaagtc 2012794  T
Q  142 attgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactgat 230  Q
     | |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  2012793 gtagaagtttatacttaaccaaagatacgttagattaatacaaggtgtaggaagctttactggcacaacacctgcagctaaatactgat 2012705  T

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Target: chr1; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 61 - 232
Target Start/End: Complemental strand, 2007391 - 2007220
Alignment:
Q  61 agtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttatacttaac 160  Q
    ||||||||||||||| | || || |||||||||||| | ||| |||||||||||||||||||||||||||||||| || |||| |||||||||||| |||    
T  2007391 agtactcacaaatatatttaattctttaagattaggcgagctcctgaacacacatagagcagttgaaatttccttaaagtcatagaagtttatactaaac 2007292  T
Q  161 aaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactgatgt 232  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2007291 caaagatatgttagattaatacaaggtgtaggaagctttactggaacagcacctgcagccaaatactgatgt 2007220  T

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Target: chr1; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 1793642 - 1793453
Alignment:
Q  40 aaagtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaac 139  Q
    |||||||||  ||| |||||||| |||||| ||||| | ||||| |||||||||||| | |||||| ||||| |||||||||| |||||||||||||||     
T  1793642 aaagtcaagccaaactaaatgagcactcactaatatatgtagttctttaagattaggcgagcttctaaacacgcatagagcagctgaaatttccttcaag 1793543  T
Q  140 tcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 229  Q
    |||||||||||||| |||||| |||||||||||| ||| |||||||||||||||||| ||  ||| |||||||||||||  |||||||||    
T  1793542 tcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactga 1793453  T

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Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 4334124 - 4334303
Alignment:
Q  50 taaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagt 149  Q
    |||| |||| ||||||||||| |||||| || ||||| ||| ||||||| ||||||||||||||| ||||| |  |||||||||| ||  | || |||||    
T  4334124 taaactaaacgagtactcacagatatttttaatttttgaaggttaggtgagcttctgaacacacaaagagcggccgaaatttcctccatgttatcgaagt 4334223  T
Q  150 ttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 229  Q
    ||||  ||||  ||||| |  |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  4334224 ttatggttaaggaaagaaaacttagattaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactga 4334303  T

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Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 3379655 - 3379481
Alignment:
Q  55 taaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttata 154  Q
    ||||| |||||||||||||||||| | ||||||||| ||||| | |||||||| ||  || || ||||  ||||||||||||||  ||||||||||||||    
T  3379655 taaataagtactcacaaatatttccaattttttaaggttaggggagcttctgagcaagcaaagggcagccgaaatttccttcaagacattgaagtttata 3379556  T
Q  155 cttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 229  Q
    | |||  |||||||  ||||||  |||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  3379555 cataaggaaagataacttagatcgatacaaggtgtaggaagctttactgatacatcacctgcagccaaatactga 3379481  T

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Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 227
Target Start/End: Complemental strand, 3373624 - 3373460
Alignment:
Q  63 tactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttatacttaacaa 162  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||  || ||||||| ||||||||||||||| |||||||||||||| | |||  |    
T  3373624 tactcacaaatatttctaattttttaagattaggtgagcttctgagcaagcaaagagcagctgaaatttccttcaagtcattgaagtttatgcataagga 3373525  T
Q  163 aagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatact 227  Q
    ||| |    |||  | |||||||||| ||||||||||||||| ||| || |||||||||||||||    
T  3373524 aagctcacataggctgatacaaggtgcaggaagctttactggcacatcatctgcagccaaatact 3373460  T

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Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 2020711 - 2020654
Alignment:
Q  1 aacgcagaaaaaggtttgcgatttccttcccagcaaataaaagtcaagttaaagtaaa 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2020711 aacgcagaaaaaggtttgcgatttccttcccagcaaataaaagtcaagttaaagtaaa 2020654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 3362659 - 3362470
Alignment:
Q  40 aaagtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaac 139  Q
    |||||||||  ||| |||| |||||||||||| |||||| | ||||  ||||||||||| |||| ||| ||  || |||||||   |||||| ||||||     
T  3362659 aaagtcaagccaaactaaacgagtactcacaattatttccaattttcgaagattaggtgagcttttgagcaagcaaagagcagccaaaattttcttcaag 3362560  T
Q  140 tcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 229  Q
    |||| ||||| ||| | |||  |||||| | | ||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  3362559 tcatcgaagtctatgcataaggaaagatgtctgagattgatacaaggtgtgggaagctttattggcacaacacctgcagccaaatactga 3362470  T

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Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 3342107 - 3342004
Alignment:
Q  126 aaatttccttcaactcattgaagtttatactta-acaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaat 224  Q
    |||||| |||||| |||||||||||||| |||| || ||| || | ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||    
T  3342107 aaattttcttcaagtcattgaagtttatgcttacacgaaaaattt-ttagattgatacaaggtgtaggaagctttactggcacaatacctgcagccaaat 3342009  T
Q  225 actga 229  Q
    |||||    
T  3342008 actga 3342004  T

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Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 229
Target Start/End: Original strand, 4322244 - 4322415
Alignment:
Q  58 atgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttatactt 157  Q
    ||||||||||||| ||||||||| |||   |||||| |||  ||||| || || ||| ||||||||  ||||||||  ||  | || ||||||||  |||    
T  4322244 atgagtactcacatatatttctaatttcagaagattgggttagcttcggagcaaacaaagagcagtcaaaatttccgccatgttatcgaagtttacgctt 4322343  T
Q  158 aacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 229  Q
    ||  ||||| |  |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  4322344 aaagaaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactga 4322415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 6600951 - 6601100
Alignment:
Q  55 taaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttata 154  Q
    ||||| ||||||||| |||||||| |||| |   |||||||||| ||||||||| |  || ||||||| ||||||||||||  | |||| |||||||||     
T  6600951 taaataagtactcaccaatatttcgagttctcgtagattaggtgagcttctgaaaaggcaaagagcagctgaaatttcctttgaatcatagaagtttatg 6601050  T
Q  155 cttaacaaaagatatgttagattaatacaaggtgtaggaagctttactgg 204  Q
    | ||   |||||||  |||||| ||| ||||| |||||||||||||||||    
T  6601051 cgtatggaaagataacttagatcaatgcaaggggtaggaagctttactgg 6601100  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 4332673 - 4332725
Alignment:
Q  55 taaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctga 107  Q
    |||||||||||||||| ||||||||| ||||  ||||||||||| ||||||||    
T  4332673 taaatgagtactcacagatatttctacttttcgaagattaggtgagcttctga 4332725  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 3193375 - 3193431
Alignment:
Q  171 ttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatact 227  Q
    ||||||| |||||| |||| ||||||||||| || ||| |||||||| |||||||||    
T  3193375 ttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatact 3193431  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 3202193 - 3202249
Alignment:
Q  171 ttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatact 227  Q
    ||||||| |||||| |||| ||||||||||| || ||| |||||||| |||||||||    
T  3202193 ttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatact 3202249  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 3211030 - 3211086
Alignment:
Q  171 ttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatact 227  Q
    ||||||| |||||| |||| ||||||||||| || ||| |||||||| |||||||||    
T  3211030 ttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatact 3211086  T

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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 21238407 - 21238233
Alignment:
Q  55 taaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttata 154  Q
    |||| ||||||||||| |||||| || ||||   |||||||||| |||||||| ||  || |||||||  || ||||||||||| ||||||||||||||     
T  21238407 taaacgagtactcacagatatttttaattttcgcagattaggtgagcttctgagcaagcagagagcagccgagatttccttcaagtcattgaagtttatg 21238308  T
Q  155 cttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 229  Q
     ||||||||||||   |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21238307 tttaacaaaagatggcttagatgaatacaaggtgtaggaagctttactggaacgacacctgcagccaaatactga 21238233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 45 - 229
Target Start/End: Complemental strand, 20953906 - 20953722
Alignment:
Q  45 caagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcatt 144  Q
    |||| |||| |||||||||||||||||||||||||| ||||  ||||||||||| |||||||| ||  || |||||||  ||||||||||| |  |  |     
T  20953906 caagctaaactaaatgagtactcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttcctttaggttgtc 20953807  T
Q  145 gaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 229  Q
    ||||||||| | |||  |||||||  |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  20953806 gaagtttatgcataaggaaagatagcttagataaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactga 20953722  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 45 - 229
Target Start/End: Complemental strand, 20935368 - 20935184
Alignment:
Q  45 caagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcatt 144  Q
    |||| |||| |||||||||||||||||||||||||| ||||  ||||||||||| |||||||| ||  || |||||||  |||||||||||||| ||||     
T  20935368 caagctaaactaaatgagtactcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttccttcaagtcatc 20935269  T
Q  145 gaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 229  Q
    ||||||||| || ||  ||||||   ||||||  |||||||||||||||||||||  ||| | ||||||||||| || |||||||    
T  20935268 gaagtttatgctcaaggaaagatgacttagatccatacaaggtgtaggaagcttttttggcaaaacacctgcagtcagatactga 20935184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 20924287 - 20924183
Alignment:
Q  125 gaaatttccttcaactcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaat 224  Q
    ||||||||| |||| || ||||||||||  | ||   ||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||    
T  20924287 gaaatttccgtcaagtcgttgaagtttaggcatatggaaagaaatgttagattaatacaaagtgtaggaagctttactggcaccacacctgcagccaaat 20924188  T
Q  225 actga 229  Q
    |||||    
T  20924187 actga 20924183  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 227
Target Start/End: Complemental strand, 17970708 - 17970521
Alignment:
Q  40 aaagtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaac 139  Q
    |||||||||  |||||||||||||||||||||  |||  || | ||| ||||||||||| |||| ||| || |||  || ||   ||||||||| ||||     
T  17970708 aaagtcaagccaaagtaaatgagtactcacaatcattcttaatctttgaagattaggtgagcttttgagcaaacaaggaacaaccgaaatttccctcaag 17970609  T
Q  140 tcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatact 227  Q
    |||||||| |||||    || | |||| |  | |||| ||||  |||||| ||||||| ||||||||||| |||||||||||||||||    
T  17970608 tcattgaaatttatttccaaaagaagagaactaagatcaataataggtgtcggaagctctactggaacaatacctgcagccaaatact 17970521  T

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