View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9731_low_39 (Length: 242)

Name: NF9731_low_39
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9731_low_39
NF9731_low_39
[»] chr1 (13 HSPs)
chr1 (1-233)||(2020933-2021165)
chr1 (3-233)||(2007798-2008028)
chr1 (26-192)||(3217176-3217342)
chr1 (47-192)||(3363965-3364110)
chr1 (120-192)||(3380264-3380336)
chr1 (78-192)||(3366390-3366504)
chr1 (117-189)||(2947210-2947282)
chr1 (49-192)||(3374067-3374210)
chr1 (117-186)||(3353406-3353475)
chr1 (118-192)||(3342702-3342776)
chr1 (137-186)||(1794138-1794187)
chr1 (96-205)||(4333563-4333672)
chr1 (96-192)||(6599659-6599755)
[»] chr2 (4 HSPs)
chr2 (41-205)||(20936082-20936246)
chr2 (41-192)||(20954323-20954474)
chr2 (47-192)||(20924478-20924623)
chr2 (48-205)||(39275231-39275388)
[»] chr4 (1 HSPs)
chr4 (137-192)||(21238958-21239013)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2020933 - 2021165
Alignment:
Q  1 ttcatgtaggcagtacaggaggagaatactgtcgttttagcacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgc 100  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  2020933 ttcatgtaggcagcacaggaggagaatacggtcgttttagcacctgcctcctattgttgggaaaatgtctttttggagccatccatacccatccaagtgt 2021032  T
Q  101 gacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatggaagtgaa 200  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2021033 gacatgtgtgtattgaaggcatctctggtatgaaagctgaattagattttttgagatttctacttctctattcgcctatgctagaaaagatggaagtgaa 2021132  T
Q  201 gcctgatttgaacgtcggatctaagttgatgtc 233  Q
    |||||||||||||||||||||||||||||||||    
T  2021133 gcctgatttgaacgtcggatctaagttgatgtc 2021165  T

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Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 2007798 - 2008028
Alignment:
Q  3 catgtaggcagtacaggaggagaatactgtcgttttagcacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcga 102  Q
    ||||||||||  ||| ||| |||| ||| ||||||||||||| |||| |||||| |||||| || ||||| ||||||||||||| | || || |||||||    
T  2007798 catgtaggcaaaacatgagaagaaaactatcgttttagcacccgccttcttttgctgggaagatatctttctggagccatccatgctcacccgagtgcga 2007897  T
Q  103 catgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagc 202  Q
    |||||   |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||  ||||||||    
T  2007898 catgtagggattgaaggcatctctggcatcaaatctgaattagattttatgagatttctacttctccattcgcctgtgctagaaaagatgagagtgaagc 2007997  T
Q  203 ctgatttgaacgtcggatctaagttgatgtc 233  Q
    |  |||| ||||| ||||| |||||||||||    
T  2007998 ccaattttaacgttggatcgaagttgatgtc 2008028  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 3217342 - 3217176
Alignment:
Q  26 atactgtcgttttagcacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctc 125  Q
    |||||| | ||||| |||| ||||||| ||||||| || ||||||||||||||||| || | ||| ||| |||||| ||||||   ||  |||| |||||    
T  3217342 atactgaccttttaacacccgcctcctattgttggaaagatgtctttttggagccacccgtgcccctccgagtgcgccatgtgagcataaaaggaatctc 3217243  T
Q  126 tggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 192  Q
    ||  |  | | |||||||||||||||| |||||||||||| | ||||| || |||||||||||||||    
T  3217242 tgacaatacatctgaattagattttatcagatttctacttatgtattctcccatgctagaaaagatg 3217176  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 3363965 - 3364110
Alignment:
Q  47 cctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattaga 146  Q
    |||||| ||||||||||||| | |||| ||||||| | || |||||  ||||||||||||||  |||  | |||||||||||  | ||| ||||||||||    
T  3363965 cctcctattgttgggaaaatatattttcggagccaacaatgcccattgaagtgcgacatgtgaggatgcatggcatctctggctttaaatctgaattaga 3364064  T
Q  147 ttttatgagatttctacttctctattcgcctatgctagaaaagatg 192  Q
    |||||| |||||||| ||| | ||||| ||| | ||||||||||||    
T  3364065 ttttatcagatttctgcttttatattctcctgtactagaaaagatg 3364110  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 3380264 - 3380336
Alignment:
Q  120 catctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 192  Q
    |||||||||||| ||| | ||||||||||||||  | ||||||||||||||||| ||||||||||||||||||    
T  3380264 catctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgctagaaaagatg 3380336  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 3366390 - 3366504
Alignment:
Q  78 gccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcct 177  Q
    |||| |||| ||||| | |||||||||||||   || || |||||||||||||| ||| | ||| ||||||||||  | |||||||||| |||||| |||    
T  3366390 gccagccatgcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaactagattttattcggtttctacttcgctattctcct 3366489  T
Q  178 atgctagaaaagatg 192  Q
    |||||||| ||||||    
T  3366490 atgctagacaagatg 3366504  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 2947282 - 2947210
Alignment:
Q  117 aggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaag 189  Q
    |||||| |||||||| ||| |||||||||||||||| |||||||| |||||  |||| || ||||||||||||    
T  2947282 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaaaag 2947210  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 3374067 - 3374210
Alignment:
Q  49 tccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagatt 148  Q
    |||| |||||||||| || ||||||  | |||| |||| ||||| ||||| | |||||||   || || |||||||||||||| | | | ||||||||||    
T  3374067 tcctattgttgggaagatatcttttcagggccagccatgcccattcaagtacaacatgtgacaatagatggcatctctggtatcagatcagaattagatt 3374166  T
Q  149 ttatgagatttctacttctctattcgcctatgctagaaaagatg 192  Q
    ||||  | ||||||||||  ||||| ||| ||||||||||||||    
T  3374167 ttattcggtttctacttcgatattctcctgtgctagaaaagatg 3374210  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 3353406 - 3353475
Alignment:
Q  117 aggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaa 186  Q
    |||||| |||||||| ||| |||||||||||||||| |||||||| |||||  |||| || |||||||||    
T  3353406 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttctacattctccaatgctagaa 3353475  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 3342702 - 3342776
Alignment:
Q  118 ggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 192  Q
    |||||||||||||  ||| ||||||||||||||||   |||||||||||| ||||| |||   ||||||||||||    
T  3342702 ggcatctctggtaccaaatctgaattagattttatccaatttctacttctatattctcctgatctagaaaagatg 3342776  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 1794138 - 1794187
Alignment:
Q  137 ctgaattagattttatgagatttctacttctctattcgcctatgctagaa 186  Q
    |||||||||||||||| |||||||||||||| ||||| ||| | ||||||    
T  1794138 ctgaattagattttatcagatttctacttctatattctcctgtcctagaa 1794187  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 4333672 - 4333563
Alignment:
Q  96 agtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatggaa 195  Q
    |||||||||||||  ||| || |||||||||||||   |  |||||||| |||| || |||||||||||||| ||||| |   ||||||||||||||       
T  4333672 agtgcgacatgtgacgatagatggcatctctggtacccagtctgaattaaatttgatcagatttctacttctatattctctggtgctagaaaagatgatt 4333573  T
Q  196 gtgaagcctg 205  Q
    ||||||||||    
T  4333572 gtgaagcctg 4333563  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 6599755 - 6599659
Alignment:
Q  96 agtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 192  Q
    |||||||||||||   || || |||||||||||||| ||| |||| ||||| || || || ||| ||||||| ||||| ||| ||||||||| ||||    
T  6599755 agtgcgacatgtgagaatagatggcatctctggtatcaaacctgagttagacttcatcagctttatacttctatattctcctgtgctagaaaggatg 6599659  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 20936082 - 20936246
Alignment:
Q  41 cacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctga 140  Q
    |||||||  ||| ||||||||||||  |||||| || |||| |||| ||||| | |||||||||||||  ||| || ||||||| |||||  |||   ||    
T  20936082 cacctgctgcctattgttgggaaaaaatcttttcggcgccagccatgcccattcgagtgcgacatgtgacgatagatggcatctttggtaacaaattgga 20936181  T
Q  141 attagattttatgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagcctg 205  Q
    |||||||||||| | |||||||||||| ||||| ||| ||||||||||||||   ||||||||||    
T  20936182 attagattttatcaaatttctacttctatattctcctgtgctagaaaagatgactgtgaagcctg 20936246  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 20954323 - 20954474
Alignment:
Q  41 cacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctga 140  Q
    |||||||| ||| |||||||||| || | |||| ||  ||| |||| ||||| |||||||||||||||  |||||| ||||||| |||||  ||    ||    
T  20954323 cacctgccgcctattgttgggaagatatattttcggcaccagccatgcccattcaagtgcgacatgtggcgattgatggcatctttggtaccaatttgga 20954422  T
Q  141 attagattttatgagatttctacttctctattcgcctatgctagaaaagatg 192  Q
    |||||||||||| | |||||||||||| ||||| || |||||||||||||||    
T  20954423 attagattttatcaaatttctacttctatattctcccatgctagaaaagatg 20954474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 20924478 - 20924623
Alignment:
Q  47 cctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattaga 146  Q
    |||||| |||||||||| || |||||| |||||||   || | | || || ||| |||||||  |||  ||| |||||||||||  ||| ||||||||||    
T  20924478 cctcctattgttgggaagatatcttttcggagccagatatgctcctcaaattgcaacatgtggagatacaagacatctctggtaccaaatctgaattaga 20924577  T
Q  147 ttttatgagatttctacttctctattcgcctatgctagaaaagatg 192  Q
    |||||| |||||||||||||||||||| ||| ||||  ||||||||    
T  20924578 ttttatcagatttctacttctctattcacctgtgctcaaaaagatg 20924623  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 39275231 - 39275388
Alignment:
Q  48 ctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagat 147  Q
    ||||| |||||||||| ||  |||||  | |||| |||| ||||||||||| |||||||||   || |  |||||| |||| || ||| |||||||||||    
T  39275231 ctcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagat 39275330  T
Q  148 tttatgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagcctg 205  Q
    ||||| | |||||| ||  | ||||| |||||||||||||| |||   ||||||||||    
T  39275331 tttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctg 39275388  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 21238958 - 21239013
Alignment:
Q  137 ctgaattagattttatgagatttctacttctctattcgcctatgctagaaaagatg 192  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  21238958 ctgagttagattttatcagatttctacttctcaattctcctatgttagaaaagatg 21239013  T

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