View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9731_low_4 (Length: 624)
Name: NF9731_low_4
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_4 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 5 - 624
Target Start/End: Original strand, 26656433 - 26657052
Alignment:
| Q |
5 |
ctatcgagtttggagttaaacgataaaattcctttcttcaacttaaaatcaattttaaatgcaaaatcaattcgaattgacaacaacaaattcaggatcg |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26656433 |
ctatcaagtttggagttaaacgataaaattcctttcttcaacttaaaatcaattttaaatgcaaaatcaattcgaattgacaacaacaaattcaggaccg |
26656532 |
T |
|
| Q |
105 |
tcatcccctgttgtcacgttcctgacaaaattttcatcgtctgagggaggtgttttcttcttgaattccaacagcaattctttgatttgtcccacatcta |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26656533 |
tcatcccctgttgtcacgttcctgacaaaattttcatcgtctgtgggaggtgttttcttcttgaattccaacagcaattctttgatttgtcccacatcta |
26656632 |
T |
|
| Q |
205 |
ttttcaactcattcagcagcttcccttgttcagtggctagcttttccaaagtgctcattttgttctctgtcgcactcctcattggatccgactggtccga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26656633 |
ttttcaactcattcagcagcttcccttgttcagtggctagcttttcaaaagtgctcattctgttctccgtcgcactcctcattggatccgactggtccga |
26656732 |
T |
|
| Q |
305 |
ccaattgttaggactctttagaacaatataagcataaagaaaattgttagaaactgtctaaatatgctagagtcttgtaaaatgaatatacggatatatt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26656733 |
ccaattgttaggactctttagaacaatataagcataaagaaaattgttagaaactgtctaaatatgctagagtcttgtaaaatgaatatagggatatatt |
26656832 |
T |
|
| Q |
405 |
gaattttttccttgtggtataagtttattatattaggaaatatcctatgaatgtagggatcttaacaacctaactaactaaattacaatcaatcaatgaa |
504 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26656833 |
gaattttttccttgtggtacaagtttattatattaggaaatatcctatgaatgtagggatcttaacaacctaactaactaaattacaatcaatcaatgaa |
26656932 |
T |
|
| Q |
505 |
tcaattaaatttatggcaacctaagaacgacacttacctcctcggaaatagctatatcattatcttcaacttcagaactcgattcagctgttgatgtatc |
604 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26656933 |
tcaattaaatttatggcaacctaagaacaacacttacctcctcggaaatagctatatcattatcttcaacttcagaactcgattcagctgtcgatgtatc |
26657032 |
T |
|
| Q |
605 |
aatgccttttacctgcaaga |
624 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
26657033 |
aatgccttttacctgcaaga |
26657052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 42 - 304
Target Start/End: Original strand, 26641689 - 26641951
Alignment:
| Q |
42 |
tcaacttaaaatcaattttaaatgcaaaatcaattcgaattgacaacaacaaattcaggatcgtcatcccctgttgtcacgttcctgacaaaattttcat |
141 |
Q |
| |
|
|||| |||| ||||||||| || | ||||| ||||| ||| ||||||||| |||||| ||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
26641689 |
tcaagttaatatcaattttgaaggtaaaattaattctaatcaacaacaacatattcagcatcgtcatctgctgttgtcacgttcttgacaacattttcac |
26641788 |
T |
|
| Q |
142 |
cgtctgagggaggtgttttcttcttgaattccaacagcaattctttgatttgtcccacatctattttcaactcattcagcagcttcccttgttcagtggc |
241 |
Q |
| |
|
| || |||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
26641789 |
cttccgaggaaggtgttttcttcatgaattccaacagcaattctttgatttgcttcatgtctattttcaactcagtcagcagcttcccttgttcactggc |
26641888 |
T |
|
| Q |
242 |
tagcttttccaaagtgctcattttgttctctgtcgcactcctcattggatccgactggtccga |
304 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| | |||||| |||| ||||||||| ||||||| |
|
|
| T |
26641889 |
tagcttttacaaagcactcattctgttctccattgcactcatcatcggatccgacaggtccga |
26641951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 503 - 624
Target Start/End: Original strand, 26663057 - 26663178
Alignment:
| Q |
503 |
aatcaattaaatttatggcaacctaagaacgacacttacctcctcggaaatagctatatcattatcttcaacttcagaactcgattcagctgttgatgta |
602 |
Q |
| |
|
|||||| ||||| |||||||||||||| || ||| ||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
26663057 |
aatcaaataaatgtatggcaacctaaggacaacatttacctcctcgcaaacagctataacattatcttcagcttcagaactcgattcagctgtcaatgta |
26663156 |
T |
|
| Q |
603 |
tcaatgccttttacctgcaaga |
624 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
26663157 |
tcgctgccttttacctgcaaga |
26663178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 624
Target Start/End: Original strand, 26670060 - 26670117
Alignment:
| Q |
567 |
tcttcaacttcagaactcgattcagctgttgatgtatcaatgccttttacctgcaaga |
624 |
Q |
| |
|
|||||| ||||||| | |||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
26670060 |
tcttcagcttcagagcccgattcagctgtggatgtatcactgccttttacctgcaaga |
26670117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 565 - 621
Target Start/End: Original strand, 26642296 - 26642352
Alignment:
| Q |
565 |
tatcttcaacttcagaactcgattcagctgttgatgtatcaatgccttttacctgca |
621 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
26642296 |
tatcttcagcttcagacctcgactcagctgtggatgtatcaatgtcttttacctgca |
26642352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 26662567 - 26662623
Alignment:
| Q |
204 |
attttcaactcattcagcagcttcccttgttcagtggctagcttttccaaagtgctc |
260 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
26662567 |
attttcaattcagtcagcagcttcccttgttcgctgggcagcttttccaaagcgctc |
26662623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University