View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_40 (Length: 241)
Name: NF9731_low_40
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5223992 - 5224216
Alignment:
| Q |
1 |
ttgagatcatattcctcttcagatccaatttgaagaaaactcgaagcgatcttcgtgaattcagaaacagttttattaccagaaagcttcgagattccgc |
100 |
Q |
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| T |
5223992 |
ttgagatcatattcctcttcagatccaatttgaagaaaactcgaagcgatcttcgtgaattcagaaacagttttattaccagaaagcttcgagattccgc |
5224091 |
T |
|
| Q |
101 |
ttttgaattttccactaatttcagcaaaatcgcttcggattccagcgataacatcttcatcagcgagattcggatcggaatcgcgagttttagaatcgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5224092 |
ttttgaattttccactaatttcagcaaaatcgcttcggattccagcgataacatcttcatcagcgagattcggatcggaatcgcgagttttagaatcgtg |
5224191 |
T |
|
| Q |
201 |
atcgtgatcgggaggtggagctagg |
225 |
Q |
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|||||||||||||||||| |||||| |
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| T |
5224192 |
atcgtgatcgggaggtggtgctagg |
5224216 |
T |
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