View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9731_low_41 (Length: 240)
Name: NF9731_low_41
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_41 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 28529652 - 28529875
Alignment:
| Q |
17 |
agattccaatcaccctgagctggttttcccatgcacttctcctttcttgctaagaataaccaccattcaaagatataccaatttgttgaatcaaacatct |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28529652 |
agattccaatcaccctgagctggtttttccatgcacttctcctttcttcctaagaataaccaccattcaaagatataccaatttgttgaatcaaacatct |
28529751 |
T |
|
| Q |
117 |
ctgtctcatttcttctgctctcaatctcaatcttgcttccttccctctcttgtttcattcccacagcctcaaaattgtgtaaaggaattttcagcttgat |
216 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28529752 |
ctgtctcattccttctgctctcaatctcaatcttgcttccttccctctcttgtttcattcccacagcctcaaaattgtgtaaaggaattttcagcttgat |
28529851 |
T |
|
| Q |
217 |
aatgatattaaggttgaaaaactt |
240 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
28529852 |
aatgatattaaggttgaaaaactt |
28529875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University