View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9731_low_42 (Length: 239)
Name: NF9731_low_42
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9731_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4903371 - 4903594
Alignment:
| Q |
1 |
ctaaaaaccgatctttgttctctaacatgaccatcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaata |
100 |
Q |
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| T |
4903371 |
ctaaaaaccgatctttgttctctaacatgaccatcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaata |
4903470 |
T |
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| Q |
101 |
aacatcacatttatctgtgaatgtattggttcggacacactctggcgccatgtatccatggccagtcgaacctgtcaacaaaaccattttgtgtaactta |
200 |
Q |
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| T |
4903471 |
aacatcacatttatctgtgaatgtattggttcggacacactctggcgccatgtatccatggccagtcgaacctgtcaataaaaccattttgtgtaactta |
4903570 |
T |
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| Q |
201 |
acttcagaaattatcgacaaaact |
224 |
Q |
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| T |
4903571 |
acgtcagaaattatcgacaaaact |
4903594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 5822861 - 5822739
Alignment:
| Q |
32 |
catcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaacatcacatttatctgtgaatgtattggtt |
131 |
Q |
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| T |
5822861 |
catcttatcaaagatggtatatttgtagtttgtacatactgcttcaagtagaaccataccaaaggagtaaacatcacatttatctgtgaaagtattggtt |
5822762 |
T |
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| Q |
132 |
cggacacactctggcgccatgta |
154 |
Q |
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| T |
5822761 |
cggacatactctggtgccatgta |
5822739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 4906768 - 4906901
Alignment:
| Q |
21 |
tctaacatgaccatcttatcaaagatagtattcttataatttgtgcctgctacttcaattagaaccataccaaaagaataaacatcacatttatctgtga |
120 |
Q |
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|||||||||| ||||||||| ||||| |||||||| |||||||||| |||||||| || ||||||||||||||| || ||||| ||| |||||||||||| |
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| T |
4906768 |
tctaacatgatcatcttatcgaagatggtattcttgtaatttgtgcatgctacttgaagtagaaccataccaaaggagtaaacgtcagatttatctgtga |
4906867 |
T |
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| Q |
121 |
atgtattggttcggacacactctggcgccatgta |
154 |
Q |
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| T |
4906868 |
aagtgttggttaggacatactttgctgccatgta |
4906901 |
T |
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