View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9731_low_8 (Length: 539)

Name: NF9731_low_8
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9731_low_8
NF9731_low_8
[»] chr2 (7 HSPs)
chr2 (14-469)||(1874778-1875219)
chr2 (467-523)||(1876373-1876429)
chr2 (324-374)||(42420366-42420416)
chr2 (339-386)||(39073749-39073796)
chr2 (414-460)||(31561671-31561717)
chr2 (406-458)||(15305761-15305813)
chr2 (332-372)||(24100882-24100922)
[»] chr1 (7 HSPs)
chr1 (324-374)||(45145174-45145224)
chr1 (321-372)||(9572182-9572233)
chr1 (406-460)||(39976139-39976193)
chr1 (332-370)||(45661185-45661223)
chr1 (326-382)||(5063413-5063469)
chr1 (326-373)||(41184723-41184770)
chr1 (326-382)||(14385827-14385883)
[»] chr5 (4 HSPs)
chr5 (319-374)||(16458051-16458105)
chr5 (324-375)||(10639901-10639952)
chr5 (326-372)||(36227745-36227791)
chr5 (319-371)||(29925784-29925836)
[»] chr8 (3 HSPs)
chr8 (334-382)||(16736042-16736090)
chr8 (406-460)||(35534542-35534596)
chr8 (333-381)||(29168957-29169005)
[»] chr7 (4 HSPs)
chr7 (334-382)||(45338407-45338455)
chr7 (319-362)||(45806410-45806453)
chr7 (319-373)||(31247601-31247655)
chr7 (333-373)||(39279720-39279760)
[»] chr4 (6 HSPs)
chr4 (319-367)||(43505899-43505947)
chr4 (319-369)||(44797829-44797879)
chr4 (319-376)||(41336704-41336760)
chr4 (332-381)||(42404063-42404112)
chr4 (325-374)||(54069489-54069538)
chr4 (324-376)||(7601707-7601759)
[»] chr3 (5 HSPs)
chr3 (324-367)||(35696208-35696251)
chr3 (414-460)||(36783281-36783327)
chr3 (324-372)||(30956700-30956748)
chr3 (324-372)||(30972512-30972560)
chr3 (327-367)||(51929439-51929479)
[»] chr6 (3 HSPs)
chr6 (320-374)||(31623504-31623558)
chr6 (324-373)||(8147650-8147699)
chr6 (319-367)||(30536637-30536685)


Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 469
Target Start/End: Original strand, 1874778 - 1875219
Alignment:
Q  14 aaagtaatgatttctaaatgtgtgactcagtaaatgtaaaatacatgctgttcnnnnnnnnnnngttaacattannnnnnnaataatcacgataaaagat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||       |||||||||||||||||||    
T  1874778 aaagtaatgatttctaaatgtgtgactcagtaaatgtaaaatacatgctgttctttttttttt-gttaacattattttttcaataatcacgataaaagat 1874876  T
Q  114 tgtattgttctccataaggctttattattcaattagtttgatgttgacaaactagaattttcattttcttgctcatacaagtgataaaagaaaagggcag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1874877 tgtattgttctccataaggctttattattcaattagtttgatgttgacaaactagaattttcattttcttgctcatacaagtgataaaagaaacgggcag 1874976  T
Q  214 aagtgattgggaaatatttgtttctcctgttgttctttgttcctctttagattgtcaaaatattcttgcctattttatttgcttgttacacaagcgttta 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |     
T  1874977 aagtgattgggaaatatttgtttctcctgttgttctttgttcctctttagattgtcaaaatattcttgcctattttatttgcttg-------------tg 1875063  T
Q  314 tcatggcattagctattgttatagcaaaagataaaataacattaaattgcttttgtatatgttgtaagtaattatttttataaagctactccagttctat 413  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1875064 taatggcattagctattgttatagcaaaagataaaataacattaaattgcttttgtatatgttgtaagtaattatttttataaagctactccagttctat 1875163  T
Q  414 caaacagtttcacaaaacttgtattattagataatctcaaataagtccaaaaacat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1875164 caaacagtttcacaaaacttgtattattagataatctcaaataagtccaaaaacat 1875219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 467 - 523
Target Start/End: Original strand, 1876373 - 1876429
Alignment:
Q  467 catctctacgggtattcccacactaaggatgcacgtacacatcctgtagaagaatgg 523  Q
    |||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||    
T  1876373 catctctatgggtattcccacactaaggatgcatgtacacatcttgtagaagaatgg 1876429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 42420416 - 42420366
Alignment:
Q  324 agctattgttatagcaaaagataaaataacattaaattgcttttgtatatg 374  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||||||||    
T  42420416 agctatttttatagcaaaagataaaataacgttaaattgtttttgtatatg 42420366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 386
Target Start/End: Complemental strand, 39073796 - 39073749
Alignment:
Q  339 aaaagataaaataacattaaattgcttttgtatatgttgtaagtaatt 386  Q
    ||||||||||||||| |||||||| ||||||||||| | |||||||||    
T  39073796 aaaagataaaataacgttaaattgtttttgtatatgctataagtaatt 39073749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 460
Target Start/End: Complemental strand, 31561717 - 31561671
Alignment:
Q  414 caaacagtttcacaaaacttgtattattagataatctcaaataagtc 460  Q
    |||||||||| ||||||||| | ||| ||||||||||||||||||||    
T  31561717 caaacagttttacaaaacttatgttagtagataatctcaaataagtc 31561671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 458
Target Start/End: Original strand, 15305761 - 15305813
Alignment:
Q  406 agttctatcaaacagtttcacaaaacttgtattattagataatctcaaataag 458  Q
    ||||||| |||||||||||||||||||| | | | ||||||| ||||||||||    
T  15305761 agttctaccaaacagtttcacaaaacttatgtcaatagataagctcaaataag 15305813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 24100882 - 24100922
Alignment:
Q  332 ttatagcaaaagataaaataacattaaattgcttttgtata 372  Q
    |||||||||||| |||||||||||||| ||| |||||||||    
T  24100882 ttatagcaaaaggtaaaataacattaatttgattttgtata 24100922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 45145174 - 45145224
Alignment:
Q  324 agctattgttatagcaaaagataaaataacattaaattgcttttgtatatg 374  Q
    ||||||| ||||||||||||||||||||| ||||||||| |||||||||||    
T  45145174 agctatttttatagcaaaagataaaataatattaaattgtttttgtatatg 45145224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 9572233 - 9572182
Alignment:
Q  321 attagctattgttatagcaaaagataaaataacattaaattgcttttgtata 372  Q
    ||||||||||  ||||||||||||||||||||  ||||||||||||||||||    
T  9572233 attagctatttctatagcaaaagataaaataaagttaaattgcttttgtata 9572182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 460
Target Start/End: Complemental strand, 39976193 - 39976139
Alignment:
Q  406 agttctatcaaacagtttcacaaaacttgtattattagataatctcaaataagtc 460  Q
    |||||| ||||||||||||||||||||| | | | ||||||||||||||||||||    
T  39976193 agttctctcaaacagtttcacaaaacttatgtcagtagataatctcaaataagtc 39976139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 370
Target Start/End: Complemental strand, 45661223 - 45661185
Alignment:
Q  332 ttatagcaaaagataaaataacattaaattgcttttgta 370  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  45661223 ttatagcaaaagataaaataacattaaattgtttttgta 45661185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 5063413 - 5063469
Alignment:
Q  326 ctattgttatagcaaaagataaaataacattaaattgcttttgtatatgttgtaagt 382  Q
    ||||| |||||  |||||||||||||||||||| ||| ||||||||||||| |||||    
T  5063413 ctatttttatactaaaagataaaataacattaacttgtttttgtatatgttataagt 5063469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 373
Target Start/End: Complemental strand, 41184770 - 41184723
Alignment:
Q  326 ctattgttatagcaaaagataaaataacattaaattgcttttgtatat 373  Q
    ||||| |||||||||||||||||||||  |||||||| ||||||||||    
T  41184770 ctatttttatagcaaaagataaaataatgttaaattgtttttgtatat 41184723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 14385883 - 14385827
Alignment:
Q  326 ctattgttatagcaaaagataaaataacattaaattgcttttgtatatgttgtaagt 382  Q
    ||||| ||||||||||||||| |||||  |||||||| |||||||| |||| |||||    
T  14385883 ctatttttatagcaaaagatagaataatgttaaattgtttttgtatctgttataagt 14385827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 16458105 - 16458051
Alignment:
Q  319 gcattagctattgttatagcaaaagataaaataacattaaattgcttttgtatatg 374  Q
    |||| ||||||| |||||||||||||||||||||| |||||||| |||||||||||    
T  16458105 gcataagctatttttatagcaaaagataaaataac-ttaaattgtttttgtatatg 16458051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 375
Target Start/End: Original strand, 10639901 - 10639952
Alignment:
Q  324 agctattgttatagcaaaagataaaataacattaaattgcttttgtatatgt 375  Q
    |||||||  |||||||||||||||||| | ||||||||| ||||||||||||    
T  10639901 agctatttctatagcaaaagataaaattaaattaaattgtttttgtatatgt 10639952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 36227745 - 36227791
Alignment:
Q  326 ctattgttatagcaaaagataaaataacattaaattgcttttgtata 372  Q
    ||||| |||||||||||||||||||| | |||||||| |||||||||    
T  36227745 ctatttttatagcaaaagataaaatagcgttaaattgattttgtata 36227791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 29925784 - 29925836
Alignment:
Q  319 gcattagctattgttatagcaaaagataaaataacattaaattgcttttgtat 371  Q
    |||| ||||||| |||||||||||||||||||| | |||||||| || |||||    
T  29925784 gcataagctatttttatagcaaaagataaaatagcgttaaattgtttctgtat 29925836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 16736042 - 16736090
Alignment:
Q  334 atagcaaaagataaaataacattaaattgcttttgtatatgttgtaagt 382  Q
    ||||||||||||||||||||||||||| | ||||||| ||||| |||||    
T  16736042 atagcaaaagataaaataacattaaatagtttttgtacatgttataagt 16736090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 460
Target Start/End: Complemental strand, 35534596 - 35534542
Alignment:
Q  406 agttctatcaaacagtttcacaaaacttgtattattagataatctcaaataagtc 460  Q
    |||||| ||||||||| ||||||||||| | ||| ||||||| ||||||||||||    
T  35534596 agttctctcaaacagtctcacaaaacttatgttagtagataagctcaaataagtc 35534542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 29169005 - 29168957
Alignment:
Q  333 tatagcaaaagataaaataacattaaattgcttttgtatatgttgtaag 381  Q
    |||||||||||||||||| | ||||||||  ||||||||||||| ||||    
T  29169005 tatagcaaaagataaaattaaattaaattatttttgtatatgttataag 29168957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 45338407 - 45338455
Alignment:
Q  334 atagcaaaagataaaataacattaaattgcttttgtatatgttgtaagt 382  Q
    ||||||||| |||||||||| |||||||| ||||||||||| |||||||    
T  45338407 atagcaaaaaataaaataaccttaaattgtttttgtatatgctgtaagt 45338455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 45806453 - 45806410
Alignment:
Q  319 gcattagctattgttatagcaaaagataaaataacattaaattg 362  Q
    |||| ||||||| |||||||||||||||||||||| ||||||||    
T  45806453 gcataagctatttttatagcaaaagataaaataacgttaaattg 45806410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 31247655 - 31247601
Alignment:
Q  319 gcattagctattgttatagcaaaagataaaataacattaaattgcttttgtatat 373  Q
    |||| ||||||| |||||||||||||| |||||||  ||||||| ||||||||||    
T  31247655 gcataagctatttttatagcaaaagatgaaataacgataaattggttttgtatat 31247601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 39279720 - 39279760
Alignment:
Q  333 tatagcaaaagataaaataacattaaattgcttttgtatat 373  Q
    ||||||||||||||||| ||  |||||||||||||||||||    
T  39279720 tatagcaaaagataaaacaaagttaaattgcttttgtatat 39279760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 43505899 - 43505947
Alignment:
Q  319 gcattagctattgttatagcaaaagataaaataacattaaattgctttt 367  Q
    |||| ||||||| |||||||||||||||||||||| |||||||| ||||    
T  43505899 gcataagctatttttatagcaaaagataaaataacgttaaattgttttt 43505947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 44797829 - 44797879
Alignment:
Q  319 gcattagctattgttatagcaaaagataaaataacattaaattgcttttgt 369  Q
    |||| ||||||| |||||||||||||||||| ||| |||||||| ||||||    
T  44797829 gcataagctatttttatagcaaaagataaaacaacgttaaattgattttgt 44797879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 41336704 - 41336760
Alignment:
Q  319 gcattagctattgttatagcaaaagataaaataacattaaattgcttttgtatatgtt 376  Q
    |||| ||||||| |||||||||| ||||||||||  |||||||| |||||||||||||    
T  41336704 gcataagctatttttatagcaaa-gataaaataaagttaaattgtttttgtatatgtt 41336760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 42404112 - 42404063
Alignment:
Q  332 ttatagcaaaagataaaataacattaaattgcttttgtatatgttgtaag 381  Q
    |||||||||||||||||||||  |||||||| ||||||| ||| ||||||    
T  42404112 ttatagcaaaagataaaataatgttaaattgtttttgtacatgctgtaag 42404063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 374
Target Start/End: Complemental strand, 54069538 - 54069489
Alignment:
Q  325 gctattgttatagcaaaagataaaataacattaaattgcttttgtatatg 374  Q
    |||||| ||||| |||||||||||||||  |||||||| |||||||||||    
T  54069538 gctatttttatatcaaaagataaaataatgttaaattgtttttgtatatg 54069489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 7601707 - 7601759
Alignment:
Q  324 agctattgttatagcaaaagataaaataacattaaattgcttttgtatatgtt 376  Q
    |||||||  ||||||||| ||||||||||  |||||||| |||||||||||||    
T  7601707 agctattcctatagcaaaggataaaataaagttaaattgtttttgtatatgtt 7601759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 367
Target Start/End: Original strand, 35696208 - 35696251
Alignment:
Q  324 agctattgttatagcaaaagataaaataacattaaattgctttt 367  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||    
T  35696208 agctatttttatagcaaaagataaactaacattaaattgttttt 35696251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 460
Target Start/End: Complemental strand, 36783327 - 36783281
Alignment:
Q  414 caaacagtttcacaaaacttgtattattagataatctcaaataagtc 460  Q
    |||||||| ||||||||||| ||||| ||||||| ||||||||||||    
T  36783327 caaacagtctcacaaaacttatattaatagataaactcaaataagtc 36783281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 30956748 - 30956700
Alignment:
Q  324 agctattgttatagcaaaagataaaataacattaaattgcttttgtata 372  Q
    |||||||  ||||||||||||||||||||  |||||||| |||||||||    
T  30956748 agctatttctatagcaaaagataaaataaagttaaattgtttttgtata 30956700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 30972560 - 30972512
Alignment:
Q  324 agctattgttatagcaaaagataaaataacattaaattgcttttgtata 372  Q
    |||||||  ||||||||||||||||||||  |||||||| |||||||||    
T  30972560 agctatttctatagcaaaagataaaataaagttaaattgtttttgtata 30972512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 51929479 - 51929439
Alignment:
Q  327 tattgttatagcaaaagataaaataacattaaattgctttt 367  Q
    |||| |||||||||||||||||||| |||||||||| ||||    
T  51929479 tatttttatagcaaaagataaaatagcattaaattgttttt 51929439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 31623504 - 31623558
Alignment:
Q  320 cattagctattgttatagcaaaagataaaataacattaaattgcttttgtatatg 374  Q
    ||||||||||| |||||| |||||||||||| || |||||||||| |||| ||||    
T  31623504 cattagctatttttatagaaaaagataaaatgacgttaaattgctcttgtgtatg 31623558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 373
Target Start/End: Original strand, 8147650 - 8147699
Alignment:
Q  324 agctattgttatagcaaaagataaaataacattaaattgcttttgtatat 373  Q
    ||||||| |||||||||||||||||||||  || ||||| ||||||||||    
T  8147650 agctatttttatagcaaaagataaaataaagttgaattgtttttgtatat 8147699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 30536685 - 30536637
Alignment:
Q  319 gcattagctattgttatagcaaaagataaaataacattaaattgctttt 367  Q
    |||| ||||||| |||||||||||||||| ||||| |||||||| ||||    
T  30536685 gcataagctatttttatagcaaaagataagataacgttaaattgttttt 30536637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University