View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9731_low_9 (Length: 531)

Name: NF9731_low_9
Description: NF9731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9731_low_9
NF9731_low_9
[»] chr1 (8 HSPs)
chr1 (67-515)||(31320500-31320949)
chr1 (112-247)||(25965410-25965545)
chr1 (104-248)||(26101993-26102137)
chr1 (106-248)||(27461216-27461358)
chr1 (131-223)||(15417033-15417125)
chr1 (111-241)||(18795124-18795254)
chr1 (131-183)||(13807852-13807904)
chr1 (123-243)||(34381663-34381783)
[»] chr8 (5 HSPs)
chr8 (104-248)||(10866924-10867068)
chr8 (104-223)||(13530165-13530284)
chr8 (104-223)||(13619704-13619823)
chr8 (105-177)||(12774949-12775021)
chr8 (133-181)||(41505639-41505687)
[»] chr5 (5 HSPs)
chr5 (107-223)||(24846200-24846316)
chr5 (392-465)||(17459841-17459914)
chr5 (104-181)||(26070411-26070487)
chr5 (104-216)||(24130591-24130703)
chr5 (208-248)||(24410964-24411004)
[»] chr4 (6 HSPs)
chr4 (104-248)||(10576389-10576533)
chr4 (104-181)||(17339915-17339992)
chr4 (109-179)||(16442363-16442432)
chr4 (131-248)||(24925768-24925885)
chr4 (123-223)||(31859940-31860040)
chr4 (132-241)||(21167693-21167802)
[»] chr2 (7 HSPs)
chr2 (118-248)||(24047332-24047462)
chr2 (159-243)||(18116974-18117058)
chr2 (124-222)||(32276574-32276672)
chr2 (107-248)||(39730386-39730527)
chr2 (159-238)||(15454575-15454654)
chr2 (107-172)||(21505250-21505315)
chr2 (131-223)||(31449920-31450012)
[»] chr3 (2 HSPs)
chr3 (112-248)||(21829167-21829303)
chr3 (99-172)||(25919575-25919648)
[»] chr6 (5 HSPs)
chr6 (111-246)||(12972421-12972556)
chr6 (135-248)||(9943184-9943297)
chr6 (131-181)||(26512879-26512929)
chr6 (131-181)||(26517995-26518045)
chr6 (107-175)||(1755660-1755728)
[»] chr7 (4 HSPs)
chr7 (123-182)||(19140075-19140134)
chr7 (123-182)||(20739474-20739533)
chr7 (107-172)||(29544458-29544523)
chr7 (104-152)||(22532774-22532822)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 67 - 515
Target Start/End: Complemental strand, 31320949 - 31320500
Alignment:
Q  67 tcgtattcaaatcatctcttaactatgtatatctgaagatggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaa 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||| |||||||| | ||    
T  31320949 tcgtattcaaatcatctcttaactatgtatatctgaagatggagcatcatatgatgttttttgttatgtttttagttagtttatttgcattcgaacagaa 31320850  T
Q  167 ataagaggtcatttaaagaatttgttcattgtttaaagaatattttgtattgttttcttttaagtagttgtaattcagtttttgggtgaagg-tctaaca 265  Q
    ||||||| | ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||||    
T  31320849 ataagagttaatttagagaatttgttcattgtttaaagaatattttgtattattttcttttgagtaattgtaattcagtttttgggtgaagggtctaaca 31320750  T
Q  266 taaaccctccaccaagtttcactggtgagccctatgattttcagaaaatttgtatgcaaatatttcttgaagcacaaggttcagaaatctagaaagcagt 365  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  31320749 taaaccgtccaccaagtttcactggtgagcactatgattttcagaaaatttgtatgcagatatttcttgaagcacaaggttcaaaaatctagaaagcagt 31320650  T
Q  366 caaaaatggtccccacattcacgctacagttgtaaatggtgtaagttcactaaaactagaaacctctttggatgaagatggtcaccaaaaggttctatac 465  Q
    |||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31320649 caaaaatggtccccacattcacgccacggttgtaaatgatgtaagttcactaaaactagaaacctctttggatgaagatggtcaccaaaaggttctatac 31320550  T
Q  466 gacaaaatggccataaacatccatgtgtcctccttagagatgaatcaatt 515  Q
     |||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  31320549 aacaaaaaggccataaacatccatgtgtcctccttagagatgaatgaatt 31320500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 247
Target Start/End: Complemental strand, 25965545 - 25965410
Alignment:
Q  112 atcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatattt 211  Q
    ||||| ||||||||| ||||||||||||||||| ||| |||  | |  ||||||||||||||||||||||||| | |||| ||| |||| |  |||||||    
T  25965545 atcatatgatgttttaggttatgtttttagttattttctttgtacttaaagacaaataagaggtcatttaaaggagttgtacatagtttgagcaatattt 25965446  T
Q  212 tgtattgttttcttttaagtagttgtaattcagttt 247  Q
    |||||| || || ||  ||| |||||||||||||||    
T  25965445 tgtattcttctcattcgagtcgttgtaattcagttt 25965410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 248
Target Start/End: Original strand, 26101993 - 26102137
Alignment:
Q  104 gatggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaa 203  Q
    ||||||||||||| |||| |||| ||  ||||||||||||| ||| ||| |||| |||  |||||||||||||||||| ||||||| |  || |||| |     
T  26101993 gatggagcatcatatgatattttaggcgatgtttttagttattttctttgcatttgaacgcaaataagaggtcatttagagaatttatcaatggtttgag 26102092  T
Q  204 gaatattttgtattgttttcttttaagtagttgtaattcagtttt 248  Q
    ||  |||||||||||||||| ||  ||| ||||||||||| ||||    
T  26102093 gaccattttgtattgttttcattcgagttgttgtaattcactttt 26102137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 27461358 - 27461216
Alignment:
Q  106 tggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaaga 205  Q
    |||||| |||| |||| ||||  | |||||||||||||| |||||||  ||| ||| ||||||||||||||||||| || | |||| |||  ||| | ||    
T  27461358 tggagcgtcatatgatattttacgctatgtttttagttattttatttgtatttgaatacaaataagaggtcatttagagcaattgtccataatttgagga 27461259  T
Q  206 atattttgtattgttttcttttaagtagttgtaattcagtttt 248  Q
    | |||||||||||||||| || |||| ||| ||||||| ||||    
T  27461258 acattttgtattgttttcattcaagttgttataattcactttt 27461216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 15417125 - 15417033
Alignment:
Q  131 tatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatattttgtattgttttc 223  Q
    |||||||||||||| ||||||  |||| ||||||||||||||| |||||||||| | |||||||| |||| |  || ||||| ||||||||||    
T  15417125 tatgtttttagttattttattcgcatttgaagacaaataagagatcatttaaaggagttgttcatggtttgagaaacattttttattgttttc 15417033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 18795124 - 18795254
Alignment:
Q  111 catcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatatt 210  Q
    ||||||||||| |||| || ||||||| |||| | ||| ||| |||| ||||  ||||||||||||||||| || |||| |  || |||| | ||| |||    
T  18795124 catcatgtgatattttaggctatgtttctagtgattttctttgcatttgaaggaaaataagaggtcatttagaggatttatcaatggtttgaggaacatt 18795223  T
Q  211 ttgtattgttttcttttaagtagttgtaatt 241  Q
    |||||| |||||| ||| |||| ||||||||    
T  18795224 ttgtatcgttttcatttgagtaattgtaatt 18795254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 13807904 - 13807852
Alignment:
Q  131 tatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaa 183  Q
    ||||||||||| || || ||||||||| |||||||||||||||||||| ||||    
T  13807904 tatgtttttagatatttcatttacatttgaagacaaataagaggtcatgtaaa 13807852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 243
Target Start/End: Original strand, 34381663 - 34381783
Alignment:
Q  123 tttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatattttgtattgtttt 222  Q
    |||| ||||||||||||| |   ||||||| |||| |||| ||||||||| || ||||| || | ||||| || |||| ||||| || || |||||||||    
T  34381663 ttttaggttatgtttttattagttttatttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttgaagaacatattatattgtttt 34381762  T
Q  223 cttttaagtagttgtaattca 243  Q
    | ||  ||| |||||||||||    
T  34381763 cattcgagtcgttgtaattca 34381783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 248
Target Start/End: Original strand, 10866924 - 10867068
Alignment:
Q  104 gatggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaa 203  Q
    |||||| |||||| |||| ||||| | |||| ||||||||| ||| |||  |||||||| |||||||||||||||||| || | ||||  || |||| |     
T  10866924 gatggaacatcatatgatattttttggtatgattttagttattttctttgaattcgaaggcaaataagaggtcatttagagtagttgtcaatggtttgag 10867023  T
Q  204 gaatattttgtattgttttcttttaagtagttgtaattcagtttt 248  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||||    
T  10867024 gaatattttgtattgttttcatttgagtcgttgtaattcagtttt 10867068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 13530284 - 13530165
Alignment:
Q  104 gatggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaa 203  Q
    ||||||||||||| ||||||||| || ||||||||||||||  || ||| || | ||||||||||||||||||||||| || |  |||  || |||| |     
T  13530284 gatggagcatcatatgatgttttaggctatgtttttagttatattctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgag 13530185  T
Q  204 gaatattttgtattgttttc 223  Q
    ||| ||||||||||||||||    
T  13530184 gaacattttgtattgttttc 13530165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 13619823 - 13619704
Alignment:
Q  104 gatggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaa 203  Q
    ||||||||||||| ||||||||| || ||||||||||||||  || ||| || | ||||||||||||||||||||||| || |  |||  || |||| |     
T  13619823 gatggagcatcatatgatgttttaggctatgtttttagttatattctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgag 13619724  T
Q  204 gaatattttgtattgttttc 223  Q
    ||| ||||||||||||||||    
T  13619723 gaacattttgtattgttttc 13619704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 12775021 - 12774949
Alignment:
Q  105 atggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtca 177  Q
    |||||||||||| ||||  |||||| | |||||||||||| ||| ||  |||| |||||||||||||||||||    
T  12775021 atggagcatcatatgatacttttggctttgtttttagttatttttttagcatttgaagacaaataagaggtca 12774949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 41505687 - 41505639
Alignment:
Q  133 tgtttttagttaatttatttacattcgaagacaaataagaggtcattta 181  Q
    |||||||||||| ||| ||| |||| |||||||||||||||||||||||    
T  41505687 tgtttttagttattttctttgcatttgaagacaaataagaggtcattta 41505639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 24846200 - 24846316
Alignment:
Q  107 ggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaa 206  Q
    ||||||| || ||||||||| || ||| |||||||||| ||| ||| |||| ||||||||||||||||||||||| || |||| | ||| |||| | |||    
T  24846200 ggagcatgatatgatgttttaggctatatttttagttactttctttgcatttgaagacaaataagaggtcatttagaggatttttccatggtttgaggaa 24846299  T
Q  207 tattttgtattgttttc 223  Q
    |||||| |||| |||||    
T  24846300 tattttatatttttttc 24846316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 465
Target Start/End: Complemental strand, 17459914 - 17459841
Alignment:
Q  392 cagttgtaaatggtgtaagttcactaaaactagaaacctctttggatgaagatggtcaccaaaaggttctatac 465  Q
    ||||||||||||| |||||||||| ||||| | |||| | || ||||||||||| |||| ||||||||||||||    
T  17459914 cagttgtaaatggcgtaagttcaccaaaaccaaaaacatgttgggatgaagatgatcacaaaaaggttctatac 17459841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 26070411 - 26070487
Alignment:
Q  104 gatggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcattta 181  Q
    |||||| |||||| |||| ||||||| |||||||||||||| ||| ||| ||||  ||| ||||||||||||||||||    
T  26070411 gatggaacatcatatgat-tttttggctatgtttttagttattttctttgcattttaaggcaaataagaggtcattta 26070487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 24130591 - 24130703
Alignment:
Q  104 gatggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaa 203  Q
    |||||||||| || |||| |||| || ||||||| |||||| | ||||| ||||  ||| |||||||||||||| ||| || ||||||  || |||| |     
T  24130591 gatggagcatgatatgatattttaggctatgtttatagttattgtatttgcattttaaggcaaataagaggtcaattagagcatttgtcaatggtttgag 24130690  T
Q  204 gaatattttgtat 216  Q
    ||| |||||||||    
T  24130691 gaacattttgtat 24130703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 24411004 - 24410964
Alignment:
Q  208 attttgtattgttttcttttaagtagttgtaattcagtttt 248  Q
    |||||||||||||||| ||| ||| ||||||||||||||||    
T  24411004 attttgtattgttttcatttgagtcgttgtaattcagtttt 24410964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 248
Target Start/End: Original strand, 10576389 - 10576533
Alignment:
Q  104 gatggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaa 203  Q
    ||||||| ||||| |||| |||| |  |||||||||||||| ||| ||| |||| ||||  ||||||||| ||||||| |||| |||| ||| |||| ||    
T  10576389 gatggagtatcatatgatattttagactatgtttttagttattttctttccatttgaaggaaaataagagatcatttagagaagttgtccatggtttgaa 10576488  T
Q  204 gaatattttgtattgttttcttttaagtagttgtaattcagtttt 248  Q
    ||| |||||||||||||||| ||  |||  |||||||||| ||||    
T  10576489 gaacattttgtattgttttcattcgagtcattgtaattcactttt 10576533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 17339992 - 17339915
Alignment:
Q  104 gatggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcattta 181  Q
    ||||||||||||| |||| |||| || |||||||||| ||| ||||||||||||  ||| ||||||||||| ||||||    
T  17339992 gatggagcatcatatgatattttaggctatgtttttaattattttatttacatttaaaggcaaataagaggacattta 17339915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 16442432 - 16442363
Alignment:
Q  109 agcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatt 179  Q
    |||||||| ||||||||| || ||||| |||||||| ||| ||| |||| |||||||||||||||||||||    
T  16442432 agcatcatatgatgttttcggctatgtgtttagtta-tttctttgcatttgaagacaaataagaggtcatt 16442363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 24925768 - 24925885
Alignment:
Q  131 tatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatattttgtattgttttcttttaag 230  Q
    |||||||||||||| |||||||  ||| ||||| |||||||| ||||||||||  | ||||  || |||| |  || |||||||||||||||| ||| ||    
T  24925768 tatgtttttagttattttatttgtatttgaagataaataagaagtcatttaaaagagttgtcaatcgtttgagtaacattttgtattgttttcatttgag 24925867  T
Q  231 tagttgtaattcagtttt 248  Q
    | | ||||||||| ||||    
T  24925868 tcgctgtaattcactttt 24925885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 31860040 - 31859940
Alignment:
Q  123 tttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatattttgtattgtttt 222  Q
    ||||||| |||||||||||||| ||| ||| |||| ||||| |||||| |||| ||||| |||| ||||  ||||||| | ||| |||||| | ||||||    
T  31860040 tttttggctatgtttttagttattttttttgcatttgaagaaaaataaaaggttatttagagaagttgtcaattgtttgaggaacattttgcactgtttt 31859941  T
Q  223 c 223  Q
    |    
T  31859940 c 31859940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 21167693 - 21167802
Alignment:
Q  132 atgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatattttgtattgttttcttttaagt 231  Q
    ||||||||||||| ||  ||| |||| ||||  |||||||| |||||||| || | |||| |||  ||||| ||| |||||||||||||||| ||  |||    
T  21167693 atgtttttagttatttgttttgcatttgaaggaaaataagacgtcatttagaggagttgtccatgttttaaggaacattttgtattgttttcattcgagt 21167792  T
Q  232 agttgtaatt 241  Q
     |||||||||    
T  21167793 tgttgtaatt 21167802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 248
Target Start/End: Original strand, 24047332 - 24047462
Alignment:
Q  118 tgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatattttgtatt 217  Q
    |||| |||| || |||||||||||||| ||||||| |||| ||||  ||||||||||| ||||| |||| ||||  || |||||| ||| ||||||||||    
T  24047332 tgatattttaggctatgtttttagttattttatttgcatttgaaggaaaataagaggttatttagagaaattgtcaatggtttaaggaacattttgtatt 24047431  T
Q  218 gttttcttttaagtagttgtaattcagtttt 248  Q
    |||||| ||  |||  |||||||||| ||||    
T  24047432 gttttcattcgagtcattgtaattcactttt 24047462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 18116974 - 18117058
Alignment:
Q  159 gaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatattttgtattgttttcttttaagtagttgtaattca 243  Q
    |||||||||| |||||||||||| || ||||| |||| |||| | ||| |||||||||||||||| ||| |||  ||||||||||    
T  18116974 gaagacaaatgagaggtcatttagaggatttggtcatggtttgacgaacattttgtattgttttcatttgagtcattgtaattca 18117058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 32276672 - 32276574
Alignment:
Q  124 ttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatattttgtattgtttt 222  Q
    |||||| |||||||||||||| ||| ||| |||| ||||  |||||||||||||||||||| |  |||  || |||| ||||| |||||| ||||||||    
T  32276672 ttttggatatgtttttagttattttctttgcatttgaaggaaaataagaggtcatttaaaggagatgtcaatggtttgaagaacattttgcattgtttt 32276574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 107 - 248
Target Start/End: Original strand, 39730386 - 39730527
Alignment:
Q  107 ggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaa 206  Q
    |||||||||| | || |||| || |||||||||||||| ||| |||| | | ||||||||||||| ||||||||| |  | |||||  | |||||| |||    
T  39730386 ggagcatcatataatattttaggctatgtttttagttattttctttataattgaagacaaataaggggtcatttagatgagttgtttgtggtttaaggaa 39730485  T
Q  207 tattttgtattgttttcttttaagtagttgtaattcagtttt 248  Q
     ||||| ||| |||||  || |||| ||||||||||| ||||    
T  39730486 cattttctatagtttttattcaagtcgttgtaattcactttt 39730527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 15454654 - 15454575
Alignment:
Q  159 gaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatattttgtattgttttcttttaagtagttgta 238  Q
    |||||||||||| ||||||||||||| | ||||  ||  ||||| ||  |||||||||||||||||||| ||| ||||||    
T  15454654 gaagacaaataataggtcatttaaaggagttgtctatgctttaaggatcattttgtattgttttcttttgagtcgttgta 15454575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 21505315 - 21505250
Alignment:
Q  107 ggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataaga 172  Q
    |||||||||| |||| ||||||| ||||||||||||   ||| ||| |||| ||||||||||||||    
T  21505315 ggagcatcatatgatatttttggctatgtttttagtatttttctttgcatttgaagacaaataaga 21505250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 31449920 - 31450012
Alignment:
Q  131 tatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatattttgtattgttttc 223  Q
    |||||||||||||| ||||||| |||| |||||||| | | | |||||||| || | ||||  || |||| | |||||||||||||| |||||    
T  31449920 tatgtttttagttattttatttgcatttgaagacaatttataagtcatttagaggagttgtagatggttttaggaatattttgtatttttttc 31450012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 248
Target Start/End: Complemental strand, 21829303 - 21829167
Alignment:
Q  112 atcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatattt 211  Q
    ||||| |||| ||||||  ||| |||||| ||| ||||||| |||| ||||  ||||||||||||||||| || | ||||  || |||| | ||| ||||    
T  21829303 atcatatgatatttttgactatatttttatttattttatttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtttgaggaacattt 21829204  T
Q  212 tgtattgttttcttttaagtagttgtaattcagtttt 248  Q
    |||||| ||||| ||| ||| ||||||||||||||||    
T  21829203 tgtattattttcatttgagtcgttgtaattcagtttt 21829167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 25919648 - 25919575
Alignment:
Q  99 ctgaagatggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataaga 172  Q
    |||| ||||||||||||| |||| ||| ||||||||||||||||  |||| |||  ||| ||||||||||||||    
T  25919648 ctgatgatggagcatcatatgatatttctggttatgtttttagtacatttctttgaatttgaagacaaataaga 25919575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 246
Target Start/End: Complemental strand, 12972556 - 12972421
Alignment:
Q  111 catcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatatt 210  Q
    |||||| |||| ||||||| |||||||||||||| ||| ||| |||| |||| ||| |||||||||||||| || | ||||  ||  ||||  ||| |||    
T  12972556 catcatttgatatttttggctatgtttttagttattttctttgcatttgaaggcaactaagaggtcatttagaggagttgtcaatgttttacggaaaatt 12972457  T
Q  211 ttgtattgttttcttttaagtagttgtaattcagtt 246  Q
    |||||||| |||| || |||  ||||||||||||||    
T  12972456 ttgtattgctttcattcaagacgttgtaattcagtt 12972421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 9943297 - 9943184
Alignment:
Q  135 tttttagttaatttatttacattcgaagacaaataagaggtcatttaaagaatttgttcattgtttaaagaatattttgtattgttttcttttaagtagt 234  Q
    |||||||||| ||| ||||||   ||||||||||||||||||||||| || | |||| ||| |||| | ||||||||||||| ||| || || |||  ||    
T  9943297 tttttagttattttttttacacctgaagacaaataagaggtcatttagaggagttgtccatcgtttgaggaatattttgtatagttatcattcaagctgt 9943198  T
Q  235 tgtaattcagtttt 248  Q
    ||||||||| ||||    
T  9943197 tgtaattcactttt 9943184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 26512929 - 26512879
Alignment:
Q  131 tatgtttttagttaatttatttacattcgaagacaaataagaggtcattta 181  Q
    |||||||||||||| ||| ||| |||| |||| ||||||||||||||||||    
T  26512929 tatgtttttagttattttgtttgcatttgaaggcaaataagaggtcattta 26512879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 26518045 - 26517995
Alignment:
Q  131 tatgtttttagttaatttatttacattcgaagacaaataagaggtcattta 181  Q
    |||||||||||||| ||| ||| |||| |||| ||||||||||||||||||    
T  26518045 tatgtttttagttattttgtttgcatttgaaggcaaataagaggtcattta 26517995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 1755728 - 1755660
Alignment:
Q  107 ggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataagaggt 175  Q
    |||||||||| |||| | |  ||||||||||||||||| ||| |||  ||| |||||||||||||||||    
T  1755728 ggagcatcatatgatatatcaggttatgtttttagttattttctttgaatttgaagacaaataagaggt 1755660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 19140134 - 19140075
Alignment:
Q  123 tttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaa 182  Q
    ||||||| |||||||| ||||| ||| ||| |||| ||||||||| ||||||||||||||    
T  19140134 tttttggctatgttttaagttattttctttgcatttgaagacaaaaaagaggtcatttaa 19140075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 20739533 - 20739474
Alignment:
Q  123 tttttggttatgtttttagttaatttatttacattcgaagacaaataagaggtcatttaa 182  Q
    ||||||| |||||||| ||||| ||| ||| |||| ||||||||| ||||||||||||||    
T  20739533 tttttggctatgttttaagttattttctttgcatttgaagacaaaaaagaggtcatttaa 20739474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 29544458 - 29544523
Alignment:
Q  107 ggagcatcatgtgatgtttttggttatgtttttagttaatttatttacattcgaagacaaataaga 172  Q
    |||||||||| |||| ||||||| |||||||||| | | ||| ||| |||| ||||||||||||||    
T  29544458 ggagcatcatatgatatttttggctatgtttttattaattttctttgcatttgaagacaaataaga 29544523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 22532822 - 22532774
Alignment:
Q  104 gatggagcatcatgtgatgtttttggttatgtttttagttaatttattt 152  Q
    ||||||||||||| |||| |||| || |||||||||||||| |||||||    
T  22532822 gatggagcatcatatgatattttaggctatgtttttagttattttattt 22532774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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