View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9732_high_1 (Length: 495)
Name: NF9732_high_1
Description: NF9732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9732_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 136 - 448
Target Start/End: Complemental strand, 24135571 - 24135258
Alignment:
| Q |
136 |
ttaataagaaggcacgaagactaggaaaatcatgaacccatgtttcaaacaaaattaaaacacaaaatttgtctaatgagtatatgtactcaccaatacc |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24135571 |
ttaataagaaggcacgaagactaggaaaatcatgaacccatgtttcaaacaaaattaaaacacaaaatttgtctaatgagtatatgtactcaccaatacc |
24135472 |
T |
|
| Q |
236 |
caaatccatgcgagaactctaatccaaaacaaaataaaattgtgcaacattgactgaccaaccaatgagaatcaaataaacatggagccggcttcattct |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24135471 |
caaatccatgcgagaactctaatccaaaaaaaaacaaaattgtgcaacattgactgaccaaccaatgagaatcaaataaacatggagccggcttcattct |
24135372 |
T |
|
| Q |
336 |
tcaaattgcacaatttcaattccaaaagagataccttagatcgggattcaacaaaag-nnnnnnnnngttttaaaccaatcatcaaagcaccaatattgc |
434 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24135371 |
ccaaattgcaaaatttcaattccaaaagagataccttagatcgggattcaacaaaagttttttttttgttttaaaccaatcatcaaagcaccaatattgc |
24135272 |
T |
|
| Q |
435 |
aaattactaaatac |
448 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
24135271 |
aaattagtaaatac |
24135258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University