View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9732_high_3 (Length: 363)

Name: NF9732_high_3
Description: NF9732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9732_high_3
NF9732_high_3
[»] chr1 (3 HSPs)
chr1 (108-201)||(50590242-50590335)
chr1 (206-308)||(50589807-50589909)
chr1 (206-300)||(19598093-19598188)
[»] chr2 (4 HSPs)
chr2 (108-201)||(16959021-16959114)
chr2 (230-277)||(16959470-16959517)
chr2 (231-305)||(22885894-22885968)
chr2 (250-304)||(27739348-27739402)
[»] chr4 (5 HSPs)
chr4 (254-300)||(28966393-28966439)
chr4 (231-306)||(12295595-12295670)
chr4 (239-308)||(46699334-46699403)
chr4 (264-308)||(8254531-8254575)
chr4 (264-308)||(8267949-8267993)
[»] chr5 (1 HSPs)
chr5 (254-308)||(27712604-27712658)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 50590335 - 50590242
Alignment:
Q  108 aataaactggttgtttgtgtgtctggtgcaacttggacgcaatattgttgtggtaccttaaaagtttctgtttcatctgcgtgatcttgagtcg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50590335 aataaactggttgtttgtgtgtctggtgcaacttggacgcaatattgttgtggtaccttaaaagtttttgtttcatctgcgtgatcttgagtcg 50590242  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 206 - 308
Target Start/End: Complemental strand, 50589909 - 50589807
Alignment:
Q  206 ttgtgagtatatccgctgtgattttttcttcaaaatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgc 305  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  50589909 ttgtgagtatatccactgtgattttttcttcgaaatgctatagtgatgttgctgctttccttgaagactatcaaccttgttgtcttgctcttgtgcttgc 50589810  T
Q  306 tga 308  Q
    |||    
T  50589809 tga 50589807  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 19598093 - 19598188
Alignment:
Q  206 ttgtgagtatatccgctgtgattttttcttcaaaatgctatagtgatgtt-gctactttccttgaagactatcaacctcgttgtcttgctcttgtg 300  Q
    |||||||||||| |  |||| ||  ||||||| |||||||| |||||||| ||| ||||||||| ||||  | |||||||||||||||||||||||    
T  19598093 ttgtgagtatattctttgtggttgattcttcagaatgctatggtgatgtttgctgctttccttggagacattaaacctcgttgtcttgctcttgtg 19598188  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 16959021 - 16959114
Alignment:
Q  108 aataaactggttgtttgtgtgtctggtgcaacttggacgcaatattgttgtggtaccttaaaagtttctgtttcatctgcgtgatcttgagtcg 201  Q
    |||||| ||||||||||||||||| ||  ||||||||  |||||||||| | || |||||||| |||  ||||||||||| |||||||||||||    
T  16959021 aataaattggttgtttgtgtgtctcgtaaaacttggagacaatattgttattgttccttaaaaatttacgtttcatctgcatgatcttgagtcg 16959114  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 16959470 - 16959517
Alignment:
Q  230 tttcttcaaaatgctatagtgatgttgctactttccttgaagactatc 277  Q
    ||||||||||||||||| | ||||||| | ||||||||||||||||||    
T  16959470 tttcttcaaaatgctatggggatgttgttgctttccttgaagactatc 16959517  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 22885968 - 22885894
Alignment:
Q  231 ttcttcaaaatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgc 305  Q
    |||||| ||||||||  | |||||| || ||||||||  ||||| |||| || ||||||||||||||||||||||    
T  22885968 ttcttcgaaatgctaaggcgatgttcctgctttccttagagactttcaatcttgttgtcttgctcttgtgcttgc 22885894  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 27739348 - 27739402
Alignment:
Q  250 gatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttg 304  Q
    ||||||||| ||||||||| ||||| | | ||| |||||||||||||||||||||    
T  27739348 gatgttgctgctttccttggagactttaagccttgttgtcttgctcttgtgcttg 27739402  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 28966393 - 28966439
Alignment:
Q  254 ttgctactttccttgaagactatcaacctcgttgtcttgctcttgtg 300  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  28966393 ttgctactttccttggagactttcaacctcgttgtcttgctcttgtg 28966439  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 12295595 - 12295670
Alignment:
Q  231 ttcttcaaaatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgct 306  Q
    ||||||| |||||||| |||||||| || |||| |||| ||||| | | ||||| |||||||||||||||||||||    
T  12295595 ttcttcagaatgctatggtgatgttactgcttttcttggagacttttagcctcgctgtcttgctcttgtgcttgct 12295670  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 46699403 - 46699334
Alignment:
Q  239 aatgctatagtgatgttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 308  Q
    |||| ||| ||||||||||| ||||||||  ||||| ||| ||||| | |||||||||||||||||||||    
T  46699403 aatgttatggtgatgttgctgctttccttcgagactttcagcctcgctatcttgctcttgtgcttgctga 46699334  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 8254531 - 8254575
Alignment:
Q  264 ccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 308  Q
    ||||| |||||||||||||| ||||||||||||||| | ||||||    
T  8254531 ccttggagactatcaacctcattgtcttgctcttgttcctgctga 8254575  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 8267949 - 8267993
Alignment:
Q  264 ccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 308  Q
    ||||| |||||||||||||| ||||||||||||||| | ||||||    
T  8267949 ccttggagactatcaacctcattgtcttgctcttgttcctgctga 8267993  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 27712604 - 27712658
Alignment:
Q  254 ttgctactttccttgaagactatcaacctcgttgtcttgctcttgtgcttgctga 308  Q
    ||||| ||||||||  ||||| ||||||||||||| |||||||||||| ||||||    
T  27712604 ttgcttctttccttagagactttcaacctcgttgtattgctcttgtgcctgctga 27712658  T

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