View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9732_low_10 (Length: 333)
Name: NF9732_low_10
Description: NF9732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9732_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 40570419 - 40570118
Alignment:
| Q |
18 |
gattatatgtaactgtctctctatgactcaaaattttgatgcgaaaaggtcctatgactgtt-gtgcctaattaaagattcgatctcacatgcaaaattc |
116 |
Q |
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| T |
40570419 |
gattatatgtaactgtctctctatgactcaaaattttgatgcgaaaaggtcctatgactgttagtgcctaattaaagattcgatctcacatgcaaaattc |
40570320 |
T |
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| Q |
117 |
atcattcttcctgcttagggagctttcgttttgttttcttctgaggggaatattggtaaagctatgcgatctagttctggcttttttaattaataagtaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40570319 |
atcattcttcctgcttagggagctttcgttttgttttcttctgaggggaatattggtaaagctatgcgatctagttctggcttttttaattaataagcaa |
40570220 |
T |
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| Q |
217 |
aagtttatttagataataaagatattagtacttagtacctggatcaatattcaatgaagaacaaagcttaatggtgggacattgagtattccagttatta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40570219 |
aagtttatttagataataaagatattagtacttagtacctggatcaatattcaatgaagaacaaagcttaatggtgggacattgagtattccagttatta |
40570120 |
T |
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| Q |
317 |
ca |
318 |
Q |
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|| |
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| T |
40570119 |
ca |
40570118 |
T |
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