View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9732_low_11 (Length: 269)
Name: NF9732_low_11
Description: NF9732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9732_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 180897 - 181137
Alignment:
| Q |
12 |
tggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatattactttcaaattaaat |
111 |
Q |
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| T |
180897 |
tggtcccgaagaagttcagattggtgatggtacaggtttgaatatttcacatgttggctctattaccctccctaccccaaatattactttcaaattaaat |
180996 |
T |
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| Q |
112 |
aaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttct |
211 |
Q |
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| T |
180997 |
aatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttgaattgcaccctacctttttct |
181096 |
T |
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| Q |
212 |
gtgtgaaggatcaggtcacgggggtgacgttgatgcgcggt |
252 |
Q |
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| T |
181097 |
gtgtgaaggatcaggtcacgggggtgacgttgatgcgcggt |
181137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 1701325 - 1701564
Alignment:
| Q |
13 |
ggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatattactttcaaattaaata |
112 |
Q |
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| T |
1701325 |
ggtccagaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctctattaccctccctacccccaatactactttcaaattaaata |
1701424 |
T |
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| Q |
113 |
aggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctg |
212 |
Q |
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| T |
1701425 |
atgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctg |
1701524 |
T |
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| Q |
213 |
tgtgaaggatcaggtcacgggggtgacgttgatgcgcggt |
252 |
Q |
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| T |
1701525 |
tgtaaaggatcaggtcacgggggcgacgttgatgcgcggt |
1701564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 5400063 - 5400124
Alignment:
| Q |
12 |
tggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctcta |
73 |
Q |
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| T |
5400063 |
tggtcccgaggaagttcaaattggtgatggtacaggtttaaaaatttctcatgttggctcta |
5400124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 3541060 - 3541121
Alignment:
| Q |
12 |
tggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctcta |
73 |
Q |
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| T |
3541060 |
tggtccagaggaagttcaaattggtgatggtacaggtttaaaaatttctcatgttggctcta |
3541121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 26593102 - 26593053
Alignment:
| Q |
19 |
gaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttgg |
68 |
Q |
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|||||||| || ||||||||||||||||||||||||||||| |||||||| |
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| T |
26593102 |
gaagaagtgcaaattggtgatggtacaggtttgaaaatttcccatgttgg |
26593053 |
T |
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