View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9732_low_13 (Length: 249)
Name: NF9732_low_13
Description: NF9732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9732_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 55061157 - 55060915
Alignment:
| Q |
8 |
ttggagttgctcataatggtaacttcgtcaattaccgttccttgagaaatgaacttgaagaatctggttcaattttcaacactacttctgatactgaagt |
107 |
Q |
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| T |
55061157 |
ttggtgttgctcataatggtaacttcgtcaattaccgttccttgagaaatgaacttgaagaatctggttcaattttcaacactacttctgatactgaagt |
55061058 |
T |
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| Q |
108 |
tttgcttcatcttattgcaacttcaaatcatagacc-ttttatagcgataattgttgaagcgtgtgaaaaagttaaaggtgcttattcaattgtgtttgt |
206 |
Q |
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| T |
55061057 |
tttgcttcatcttattgcaacttcaaatcatagacctttttatagcgagaattgttgaagcgtgtgaaaaagttaaaggtgcttattcaattgtgtttgt |
55060958 |
T |
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| Q |
207 |
tactaaagataaacttgttgttgtcagagatccttttggtttt |
249 |
Q |
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| T |
55060957 |
tactgaagataaactttttgttgtcagagatccttttggtttt |
55060915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 27357340 - 27357103
Alignment:
| Q |
8 |
ttggagttgctcataatggtaacttcgtcaattaccgttccttgagaaatgaacttgaagaatctggttcaattttcaacactacttctgatactgaagt |
107 |
Q |
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|||| ||||||||||| ||||| || || ||||| ||| | || ||| | | ||||||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
27357340 |
ttggtgttgctcataacggtaatttagttaattatcgtactttaagagctaagcttgaagaaaaaggttcgatttttaacactacttctgatactgaagt |
27357241 |
T |
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| Q |
108 |
tttgcttcatcttattgcaacttcaaatcatagaccttttatagcgataattgttgaagcgtgtgaaaaagttaaaggtgcttattcaattgtgtttgtt |
207 |
Q |
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| T |
27357240 |
tgttcttcatttgattgctacttcaaagcatagaccttttattttaagaattgttgatgcatgtgagaagcttgaaggtgcttattcgattgtgtttgtt |
27357141 |
T |
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| Q |
208 |
actaaagataaacttgttgttgtcagagatccttttgg |
245 |
Q |
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| T |
27357140 |
actgaggataagcttgttgctgtgagggatccatttgg |
27357103 |
T |
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