View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9732_low_18 (Length: 203)
Name: NF9732_low_18
Description: NF9732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9732_low_18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 40146915 - 40147101
Alignment:
| Q |
17 |
acgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaatgactctgatgataacgaaaaattcaattcatca |
116 |
Q |
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| T |
40146915 |
acgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagccacaaaagaatgactctgatgataacgaaaagttcaatccatca |
40147014 |
T |
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| Q |
117 |
gagaggttattccatttcacgaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatcc |
203 |
Q |
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| T |
40147015 |
gagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatcc |
40147101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 8102953 - 8102848
Alignment:
| Q |
94 |
ataacgaaaaattcaattcatcagagaggttattccatttcacgaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaa |
193 |
Q |
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| T |
8102953 |
ataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacgggtacgaacaa |
8102854 |
T |
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| Q |
194 |
aatatc |
199 |
Q |
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| T |
8102853 |
aatatc |
8102848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 7655667 - 7655742
Alignment:
| Q |
18 |
cgttggtttccaagtggtattcaacatcccatacgatttccttttactatagagtcacaaaagaatgactctgatg |
93 |
Q |
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| T |
7655667 |
cgttggtttccaaatggaattcaacgacctatacgatttcctttaactatagagccacaaaagaatcactctgatg |
7655742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 7606825 - 7606777
Alignment:
| Q |
18 |
cgttggtttccaagtggtattcaacatcccatacgatttccttttacta |
66 |
Q |
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| T |
7606825 |
cgttggtttccaaatggtattcaacttcccatacgatttcctttcacta |
7606777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 7629211 - 7629167
Alignment:
| Q |
17 |
acgttggtttccaagtggtattcaacatcccatacgatttccttt |
61 |
Q |
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| T |
7629211 |
acgttggtttccaaatggtattcaacttcccatacgatttccttt |
7629167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 7615821 - 7615778
Alignment:
| Q |
18 |
cgttggtttccaagtggtattcaacatcccatacgatttccttt |
61 |
Q |
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| T |
7615821 |
cgttggtttccaaatggtgttcaacagcccatacgatttccttt |
7615778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 11969428 - 11969370
Alignment:
| Q |
90 |
gatgataacgaaaaattcaattcatcagagaggttattccatttcacgaaggagaaaat |
148 |
Q |
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| T |
11969428 |
gatgaaaaagaaaaactcaatccaccagagaggttattccatttcacaaagcagaaaat |
11969370 |
T |
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