View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9732_low_2 (Length: 487)

Name: NF9732_low_2
Description: NF9732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9732_low_2
NF9732_low_2
[»] chr6 (2 HSPs)
chr6 (19-422)||(33173821-33174224)
chr6 (22-77)||(11643392-11643446)
[»] chr5 (2 HSPs)
chr5 (22-93)||(22415675-22415747)
chr5 (352-385)||(35886710-35886743)
[»] chr3 (1 HSPs)
chr3 (19-88)||(29583445-29583515)
[»] chr4 (3 HSPs)
chr4 (22-93)||(16740792-16740864)
chr4 (118-221)||(1658239-1658342)
chr4 (118-163)||(55906146-55906191)
[»] chr7 (1 HSPs)
chr7 (19-91)||(18501661-18501733)
[»] chr8 (1 HSPs)
chr8 (118-163)||(16795388-16795433)
[»] scaffold0512 (1 HSPs)
scaffold0512 (19-91)||(11575-11647)


Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 33174224 - 33173821
Alignment:
Q  19 aaaccttcacaatttttcatcccatcatctcacactctctctccacctttcttctacaaaaatgtgtttccattgctgatcggtactctgaaaattcaag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  33174224 aaaccttcacaatttttcatcccatcatctcacactctctctccacctttcttctacaaaaatgtgtttccattgctgatcggtactctgaaaattcagg 33174125  T
Q  119 attgtatgaataatcaatgaagatggtgtcacgctgcaaagaagcatcatctatctagatgtgacgttggtctacttgggcgtaagattgaccttcaagg 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33174124 attgtatgaataatcaataaagatggtgtcacgctgcaaagaagcatcatctatctagatgggacgttggtctacttgggcgtaagattgaccttcaagg 33174025  T
Q  219 tctttctccccatccaatgcaatgttgatattgagatgaaggtagaatggatgttaagagaaataaagggtgtatgatctagtgcgagtagatcatgata 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33174024 tctttctccccatccaatgcaatgttgatattgagatgaaggtagaagggatgttaagagaaataaagggtgtatgatctagtgcgaatagatcatgata 33173925  T
Q  319 atatcaacgagagaaataatagtttgttgtgagtcggaccaccatggtcaaaaacatttacttgatcgtccttagctcatccaataaattattcgatctt 418  Q
    |||| ||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33173924 atattaacgagagaaataatagtttgttgtgagtcgaactgccatggtcaaaaacatttacttgatcgtccttagctcatccaataaattattcgatctt 33173825  T
Q  419 acat 422  Q
    ||||    
T  33173824 acat 33173821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 11643392 - 11643446
Alignment:
Q  22 ccttcacaatttttcatcccatcatctcacactctctctccacctttcttctacaa 77  Q
    |||||||||||| |||| || ||||||||||||||| |||| ||||||||||||||    
T  11643392 ccttcacaatttctcattccgtcatctcacactctc-ctcctcctttcttctacaa 11643446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 22415747 - 22415675
Alignment:
Q  22 ccttcacaatttttcatcccatcatctcacactctct-ctccacctttcttctacaaaaatgtgtttccattg 93  Q
    |||||||||||| |||||||||||| ||||||||||| ||||  |||| |||||||| |||||||||||||||    
T  22415747 ccttcacaatttctcatcccatcatgtcacactctctcctccttctttattctacaacaatgtgtttccattg 22415675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 35886710 - 35886743
Alignment:
Q  352 tcggaccaccatggtcaaaaacatttacttgatc 385  Q
    ||||||||||||||||||||||||||||||||||    
T  35886710 tcggaccaccatggtcaaaaacatttacttgatc 35886743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 29583445 - 29583515
Alignment:
Q  19 aaaccttcacaatttttcatcccatcatctcacactctct-ctccacctttcttctacaaaaatgtgtttc 88  Q
    ||||||| ||||||| |||||||||||||||||||| ||| ||||  ||||||||||||| ||||||||||    
T  29583445 aaacctttacaatttctcatcccatcatctcacactttctcctccttctttcttctacaacaatgtgtttc 29583515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 16740864 - 16740792
Alignment:
Q  22 ccttcacaatttttcatcccatcatctcacactctct-ctccacctttcttctacaaaaatgtgtttccattg 93  Q
    ||||||||| || |||||||||||||||||||||||| |||| ||||||||  |||| ||||||||| |||||    
T  16740864 ccttcacaaattctcatcccatcatctcacactctctcctcctcctttcttaaacaacaatgtgttttcattg 16740792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 1658342 - 1658239
Alignment:
Q  118 gattgtatgaataatcaatgaagatggtgtcacgctgcaaagaagcatcatctatctagatgtgacgttggtctacttgggcgtaagattgaccttcaag 217  Q
    ||||||||||||  ||||||  ||||||| || ||| |||||||||| ||||| ||| | ||||| |||||||| |||||| |||   |||||| |||||    
T  1658342 gattgtatgaatggtcaatgtggatggtgccatgctacaaagaagcaacatctgtctgggtgtgaggttggtctgcttgggtgtatcgttgaccatcaag 1658243  T
Q  218 gtct 221  Q
    ||||    
T  1658242 gtct 1658239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 55906146 - 55906191
Alignment:
Q  118 gattgtatgaataatcaatgaagatggtgtcacgctgcaaagaagc 163  Q
    |||||||||||| |||||||| |||||||  |||||||||||||||    
T  55906146 gattgtatgaatgatcaatgaggatggtgatacgctgcaaagaagc 55906191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 18501661 - 18501733
Alignment:
Q  19 aaaccttcacaatttttcatcccatcatctcacactctctctccacctttcttctacaaaaatgtgtttccat 91  Q
    |||||||||| |||| |||  ||||||||||||||| ||||  |  ||| |||||||||||||||||||||||    
T  18501661 aaaccttcaccatttctcacaccatcatctcacactttctcctcctcttccttctacaaaaatgtgtttccat 18501733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 16795433 - 16795388
Alignment:
Q  118 gattgtatgaataatcaatgaagatggtgtcacgctgcaaagaagc 163  Q
    |||||||||||   ||||||| ||||||||||||||||||||||||    
T  16795433 gattgtatgaacggtcaatgaggatggtgtcacgctgcaaagaagc 16795388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 11575 - 11647
Alignment:
Q  19 aaaccttcacaatttttcatcccatcatctcacactctctctccacctttcttctacaaaaatgtgtttccat 91  Q
    |||| ||||| |||| |||  ||||||||||||||||||||  |  ||| ||||||||| |||||||||||||    
T  11575 aaactttcaccatttctcacaccatcatctcacactctctcctcctcttccttctacaacaatgtgtttccat 11647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University